Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq68655 188 8e-43 seq539347 141 1e-28 seq507140 138 1e-27 seq466961 125 8e-24 seq40677 123 3e-23 seq216476 122 1e-22 seq680530 116 4e-21 seq214663 104 3e-17 seq550293 102 9e-17 seq428484 96.9 4e-15 seq398894 96.9 4e-15 seq37697 96.9 4e-15 seq542539 93.3 5e-14 seq407668 89.7 6e-13 seq532379 87.8 2e-12 seq337787 82.4 8e-11 >seq68655 Length=5599 Score = 188 bits (208), Expect = 8e-43 Identities = 193/252 (77%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 165097 GGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATAT 165156 ||||||||||||||||| || || | | |||||||||||||||||| || |||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 165157 AGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGT 165216 || | ||| || ||| || | || ||||| || | || ||| | ||| ||| || Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 165217 TTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAA 165276 || | ||||||||||||| | || |||||||||||||| ||| |||| | || ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 165277 GCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 165336 ||||| || ||||| ||||||||||| ||||||||| | || | ||||| |||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 165337 GGATCTCTTTTC 165348 || || || ||| Sbjct 962 GGTTCCCTATTC 973 >seq539347 Length=3493 Score = 141 bits (156), Expect = 1e-28 Identities = 118/143 (83%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 165220 TCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCA 165279 ||||||||||||||| | || |||||||||||||| |||| |||| | || ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 165280 GAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGA 165339 || || ||||| ||||||||||| ||||||||| | || || ||| | |||||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 165340 TCTCTTTTCTCTGCTATGCATGG 165362 | || ||| ||||||||||||| Sbjct 120 TTCCTATTCACTGCTATGCATGG 142 >seq507140 Length=321 Score = 138 bits (152), Expect = 1e-27 Identities = 193/271 (71%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 166566 ATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTC 166625 |||| ||| || ||| ||| || || || || || |||| ||||| ||||||| || Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 166626 GCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCAC 166685 || || ||| || || || | || || |||||| |||||||| | |||||||| || Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 166686 AACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTG 166745 || ||||| |||||||||||||||||||||| || || | | | |||| || || Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 166746 CTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCA 166805 || | || || ||||| | || ||||| |||||||| | | | || ||||| ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 166806 AATACTTTCAAGGCATTCGACTCTACTCAAG 166836 ||||| ||| || || || | ||||||| Sbjct 289 AATACCTTCTGTGCTTTTAACCCAACTCAAG 319 >seq466961 Length=778 Score = 125 bits (138), Expect = 8e-24 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 167037 GAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGT 167096 || |||||||| ||||| || ||||| ||||| || ||||| || || |||||||| ||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 167097 TCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTT 167156 | ||||||||| || ||||| |||||||| | | | ||||||||||||||||||| Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 167157 CCTAGAGGTAACGCTCTCTAA 167177 || | || |||||||| ||| Sbjct 657 CCACGTGGAAACGCTCTTTAA 637 >seq40677 Length=4500 Score = 123 bits (136), Expect = 3e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 165079 GGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCT 165138 ||||||||||| || |||||||||||||||||||| || || || |||||||||||| Sbjct 166 GGTGTAGCTTGGTATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCT 107 Query 165139 TGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTAT 165198 |||||| || |||||| | | ||| || |||||| | | ||||||| || | || Sbjct 106 TGGATTGCTGTTGCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTAC 47 Query 165199 CCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCT 165244 ||| | || ||||| || | ||||||||||| ||| | || |||| Sbjct 46 CCTATTGGCCAAGGAAGCTCTTCTGATGGTATACCTTTAGGAATCT 1 >seq216476 Length=3150 Score = 122 bits (134), Expect = 1e-22 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 166488 GGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGC 166546 ||||||||| | || || |||||| | ||| |||| | || | || | || ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 166547 AATCGCTTTTTCTGGTCCTATTGCTGTCTTC-GTTAGTGTCTTTCTCATCTACCCTCTGG 166605 |||| | || |||||||| |||| ||| || ||| || || || | || || |||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 166606 GTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCC 166665 | ||||| ||||||| || | || ||| || || |||| || || ||||| ||| Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 166666 TTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGC 166723 ||||| ||| |||||| || || |||| |||||||||||||||||||||| || || Sbjct 2822 TTTTC-TTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq680530 Length=586 Score = 116 bits (128), Expect = 4e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 164977 GCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTAC 165036 || |||||| | ||||| || || ||||||||||||||| ||||| ||||| ||| Sbjct 50 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATTTGCTGATGAGTGGTTATAC 109 Query 165037 AACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATG 165096 || ||||||||||| || | |||| | ||||| | | ||||||||||| || ||| Sbjct 110 AATGGTGGTCCTTATGAGCTAATTGTTCTAAACTTCTTACTTGGTGTAGCTTGTTATATG 169 Query 165097 GGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGC 165133 ||||||||||||||||| || ||| || || |||| Sbjct 170 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGCATGC 206 >seq214663 Length=1678 Score = 104 bits (114), Expect = 3e-17 Identities = 174/249 (70%), Gaps = 11/249 (4%) Strand=Plus/Plus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 || ||||| || |||| ||||| ||||| | |||||||| || | | || ||| Sbjct 1385 AATCGTCTATACATCGGATGGTTTCGTGTTTTGATGATCCCTACCTTATT-GACG--ACA 1441 Query 164851 ATTTGT---TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGT 164907 | || | ||||||| || |||||||| || | | || || ||||||||||||||| Sbjct 1442 ACTTCTGTATTTATTATCGCCTTCATCGCCGCCCTTCTAGTAGATATTGATGGTATTCGT 1501 Query 164908 GAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCG 164967 || | ||| | |||||| || | ||| | ||||| || | |||||||| | | | || Sbjct 1502 GAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAATATTACCTCTGGTGTTATTATCCCT 1561 Query 164968 TCTTCTAACGCAATCGGACTTCACTTCTATCCTATT-----TGGGAAGCTGCAACCATGG 165022 ||||| || ||| || | ||||| || || ||| |||||||||||| | | | Sbjct 1562 ACTTCTGCGGCGATCAGATTGCACTTGTACCCAATTTGGGATGGGAAGCTGCATCTGTTG 1621 Query 165023 ATGAATGGT 165031 |||| |||| Sbjct 1622 ATGAGTGGT 1630 >seq550293 Length=8024 Score = 102 bits (112), Expect = 9e-17 Identities = 175/250 (70%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 166472 TGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTA 166530 ||||||||| | ||| ||||||||| | | | |||||| | ||||| ||| | | Sbjct 7586 TGCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT- 7528 Query 166531 TTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTC 166590 | || | || ||||||||| | || ||| |||| |||||| | || ||| | | || Sbjct 7527 TACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTA-TCTATTCT 7469 Query 166591 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAA 166650 | || || || || || ||||| ||||||| || || | |||| | | || | | Sbjct 7468 TTATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGA 7409 Query 166651 TCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATA 166710 | || ||||| || ||||| | ||| | || || || |||| ||||||||||||||| Sbjct 7408 TATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATA 7349 Query 166711 TGATGGGTGT 166720 ||||||| || Sbjct 7348 TGATGGGAGT 7339 >seq428484 Length=423 Score = 96.9 bits (106), Expect = 4e-15 Identities = 99/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 166803 GCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACA 166862 |||||||| ||| || || || | |||||||| |||||||| ||||||||||| || Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 166863 GCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCAT 166922 || ||||||| |||||| || ||||| ||| |||| ||| ||||| | ||||| ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 166923 TTCTTTAT 166930 | ||||| Sbjct 337 CT-TTTAT 343 >seq398894 Length=318 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/185 (72%), Gaps = 12/185 (6%) Strand=Plus/Plus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||| | ||| | ||| ||| | || | |||||| |||| |||||||||||| | Sbjct 140 TTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTG 199 Query 164824 ATGATCCC---CTGTTTGCTCGCCGCTACAATTT--GT-TTTATTACTGCATTCATCGCT 164877 |||||||| || ||| ||||| || || ||||||| || ||||||||| Sbjct 200 ATGATCCCTACCTTATTGAG------TACAACTTCCGTATTTATTATCGCCTTCATCGCT 253 Query 164878 GCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGT 164937 || || || || || ||||||||||||||||| ||||| | |||||| || | || || Sbjct 254 GCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGA 313 Query 164938 AACAA 164942 ||||| Sbjct 314 AACAA 318 >seq37697 Length=321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 166539 TACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTAC 166598 || ||||||||| | || |||||| | |||| ||| || ||| || || || || || Sbjct 3 TATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTAT 62 Query 166599 CCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGA 166658 || ||||| ||||| | ||||| || | || ||| || | | || || || | Sbjct 63 CCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTGT 122 Query 166659 TTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGT 166718 ||| |||||||| ||| |||||| || || |||| |||||||||||||||||| ||| Sbjct 123 TTCATCCTTTTC-TTCTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGGA 181 Query 166719 GTAGC 166723 || || Sbjct 182 GTTGC 186 >seq542539 Length=11310 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 165613 TTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGAC 165672 ||||| ||||| || ||| | ||||||||| | || || |||||||||||| Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 165673 GTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTC 165732 | | ||||||||| || ||| |||||||||||||| | ||||| |||||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 165733 CCCCTCGACCTCGCTGCTG 165751 || || ||| | |||| || Sbjct 6973 CCTCTAGACTTAGCTGATG 6955 >seq407668 Length=643 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 165544 GCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAAC 165603 || ||| ||||||| || |||||||||||| || || || |||| || ||| |||||| Sbjct 491 GCTTGGTCTGTAGTAGGAATCTGGTTCACTACT-TTAGTATTAGTACTATGCTTTTCAAC 433 Query 165604 CTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCA 165644 || || |||||||| |||||||| ||| | ||| ||||||| Sbjct 432 CTAAATGGTTTCAATTTCAACCAATCTGTAGTTAATAGTCA 392 >seq532379 Length=15352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/233 (69%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 166188 CGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTT 166247 || || |||||||||||||| || |||||||| || | || |||| ||||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 166248 GCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTC 166307 ||| | || ||||| | || ||||| ||||| || || ||||||||| ||| || | Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCAT-GATTG 14503 Query 166308 GCAAGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAT 166367 || || ||| |||| || || ||| | || || | ||||||||| || || || Sbjct 14504 GCTAGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGCCAAT 14563 Query 166368 GCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTT 166420 | | | |||| | | || || ||||| || || || ||||| ||||| Sbjct 14564 AGTTTAGCACATT---TGTTGCTACTATGGGG-CCCGAAGCACAAGGAGATTT 14612 >seq337787 Length=336 Score = 82.4 bits (90), Expect = 8e-11 Identities = 165/242 (68%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||| | ||| | ||| ||| | || |||||||| |||| || ||||||||| | Sbjct 97 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGATTCGGTGTTTTG 156 Query 164824 ATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCC 164882 |||| ||| || | | || || | ||| ||||||| | |||||| |||| || Sbjct 157 ATGACCCCTACCTTATTGACTGCAACC-TATGTATTTATTATCTCCTTCATCACTGCCCC 215 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 || | || ||||||||||||||||| | ||| | ||||| || | || || ||||| Sbjct 216 TCCACTAGATATTGATGGTATTCGTGAGCATGT-TCTTGTTCTTTACTTTATGGAAACAA 274 Query 164943 CATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTAT 165002 || |||||||| | | || ||||| | | |||| | ||||| || || || Sbjct 275 TATTNNNNCTGGTGCTATTATCCCCACTTCTGCGGTGAACGGATTGCACTTTTACCCAAT 334 Query 165003 TT 165004 || Sbjct 335 TT 336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552516472087680