Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq68655 136 5e-27 seq539347 123 3e-23 >seq68655 Length=5599 Score = 136 bits (150), Expect = 5e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 170030 AGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTC 170089 |||||||||| | || | ||||||||||||||||| ||| |||||||| |||| Sbjct 729 AGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATATTCAGCTC 788 Query 170090 CAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAG 170149 || |||| | ||| | ||||| | || ||| | ||| | | | || | | Sbjct 789 ATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGCTTTTTTG 848 Query 170150 ACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGC 170209 | || |||||| |||| ||||| ||||| || ||| | ||| | |||||||| ||||||| Sbjct 849 ATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAGGCAGAGC 908 Query 170210 ACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGG 170264 ||||||| |||||||| |||||||| ||| ||| | |||||| | ||||| || Sbjct 909 ACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGCGG 963 >seq539347 Length=3493 Score = 123 bits (136), Expect = 3e-23 Identities = 132/173 (76%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 170146 TCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCA 170205 || || || |||||| |||| ||||| ||||| || ||||| ||| | |||||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 170206 GAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGA 170265 ||||||||||| |||||||| |||||||| ||| ||| || ||| || | ||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 170266 GCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGA 170318 || ||| | || ||||| ||||| | ||||| ||| | | ||||| || Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGA 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571324315480800