Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq68655 156 5e-33 seq539347 134 2e-26 seq680530 82.4 9e-11 >seq68655 Length=5599 Score = 156 bits (172), Expect = 5e-33 Identities = 188/253 (74%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 84371 GAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGAT 84430 |||||| | || |||||||||||||| | || |||||||| || |||||||||||||| Sbjct 973 GAATAGGGAACCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAAGGAT 914 Query 84431 GTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCAT 84490 ||| || || |||||||| |||| ||| |||||| || || ||||| || | ||||| Sbjct 913 GTTGTGCTCTGCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAGGCAT 854 Query 84491 GCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGC 84550 |||||| | || ||| || | ||| || | | ||| | ||||| | ||||| Sbjct 853 ACCATCAAAAAAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAGCTGC 794 Query 84551 AACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGA-GACGATATGAAAGTT 84609 ||| |||| || || |||||| ||||| ||||||||||| | | || || ||||| Sbjct 793 AACATGAGCTGAATATGCAACATCAATCCAAGGACGCATACCCATGTGGAAAT-TAAGTT 735 Query 84610 CCCATTCACGACC 84622 |||| |||||||| Sbjct 734 CCCACTCACGACC 722 >seq539347 Length=3493 Score = 134 bits (148), Expect = 2e-26 Identities = 122/151 (81%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 84349 CAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACA 84408 |||| ||||||||||| |||| |||||| || |||||||||| ||| || || |||| Sbjct 149 CAAG-GAACCATGCATAGCAGTGAATAGGAAACCGCCGAATACAC-AGCTACACCTAACA 92 Query 84409 TGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACG 84468 |||| || ||||||||||||||||| || || |||||||| |||| ||| ||||||| | Sbjct 91 TGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAG 32 Query 84469 TTCCTGAGATACCAAGTGGCATGCCATCAGA 84499 | || ||||| || | ||||| |||||||| Sbjct 31 TACCAGAGATTCCTAAAGGCATACCATCAGA 1 >seq680530 Length=586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 84586 GCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCA 84645 |||| || ||||| | ||||||||| ||||||||||| ||| | | |||||| | Sbjct 206 GCATGCCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTA 147 Query 84646 GGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTG 84705 ||||| | |||| || | |||||| |||||||| |||| ||| || || | || Sbjct 146 AGAAGTTTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAGCAAATG 87 Query 84706 CTGCTTCCCAAATAGGATAGAAATG 84730 | ||||||||||| || || || || Sbjct 86 CAGCTTCCCAAATTGGGTAAAAGTG 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559978756849560