Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq38979 91.5 2e-13 >seq38979 Length=18682 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 9845 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 9904 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| | | |||| || ||||| | ||| ||||| || | ||| || | ||||| Sbjct 9905 GTATGTTTTGACAGCAGACTCAATATCATCCTTG-TGTATCCCAACAGAAACCCTCATTA 9963 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||||| ||| |||||||| |||| || | | ||||| ||||| || | || | Sbjct 9964 ACATATGTTGTGGTCTTTCGACAACCTTCCCACCAACTTTCAGTAGATAAGACCTCTCAA 10023 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || ||||||||||| | | ||| |||||| |||||| ||| || Sbjct 10024 GCGTCTTAAAACCAAAGAAATCGTAGTCAAAGTCTCTATCATAAATTAT 10072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550995157203480