Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq539222 102 6e-16 seq122391 93.3 3e-13 seq533899 89.7 4e-12 seq553040 86.0 5e-11 >seq539222 Length=7428 Score = 102 bits (112), Expect = 6e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || || || || |||||||| || | || || || || |||| Sbjct 2801 ATGCTGTCGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 2742 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| || |||||| | || || |||||||| || ||||||||||| Sbjct 2741 CTGGAGTGATTGCTGGCCTAAATGTTATGCGCATCATCAATGAGCCAACTGCTGCTGCTA 2682 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 2681 TTGCTTATGGTCTTGACAA 2663 >seq122391 Length=5611 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || || ||||||||| || || ||| ||||||||||| | ||| | Sbjct 3158 GAGGCGGAGGACTAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCCAAAGTGCG 3099 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| ||||| || || || ||||| ||||| || ||||| |||||||| || || || Sbjct 3098 CCCATCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATACCCTC 3039 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAG 563434 || || || ||||| ||| || ||||| || |||| | | || || |||| Sbjct 3038 CTTGTCCTGGATTTTCGCTTTGACATTGTCAATGGTGTCAGAGCTCTCGAC-CTCTAGAG 2980 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || ||||| || || || || ||||| || || Sbjct 2979 TTATGGTCTTCCCAGTGAGGGTCTTGACAAAAATCTGTAT 2940 Score = 87.8 bits (96), Expect = 1e-11 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || || ||||| || ||||| || || ||| ||||||||||| | || | | Sbjct 2926 CGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGGCCA 2867 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 ||||| ||||||||||| ||||| ||||| || || || || |||||||| || || || Sbjct 2866 TCTTCCAGTTGTTTTCCAGCAAAGATAAGCCTCTGTTGGTCCGGAGGAATGCCCTCCTTG 2807 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC---AGTGTGAGTACATTCGAGAGTA 563436 || ||||| || ||| || ||||| ||||| | | | | || || ||||| Sbjct 2806 TCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGAACTCTCA--AC-CTCAAGAGTG 2750 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||| || || || || || || || ||||| ||||| Sbjct 2749 ATAGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 2712 >seq533899 Length=8201 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 || || | || || || || || ||||| || || ||||| | || || || || || | Sbjct 2675 TTTCGAAGGCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCA 2734 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | |||||||| || |||||||||||| |||| | | || ||||| ||||| ||||||| Sbjct 2735 AGGATGCTGGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTG 2794 Query 550512 CTGCACTTGCATATGGA 550528 |||| || | |||||| Sbjct 2795 CTGCTCTGTCTTATGGA 2811 >seq553040 Length=6571 Score = 86.0 bits (94), Expect = 5e-11 Identities = 294/451 (65%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 || || ||| | || || || || || | | ||||| || | | || ||||| || Sbjct 4679 CTCAGGACTTCATGTGAGAGGGCGAAGAGGACCCTTTCTTCCACTGCCCAGACCACCATC 4738 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 || | ||||| | ||||||||| |||||| || | | || | ||||||| ||| Sbjct 4739 GAGATCGATTCTCTCTTTGAGGGAGTTGATTTCTATTCCACCATCACCAGGGCCAGGTTT 4798 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TAAG 552085 || || | || ||||| || || || || ||||| || |||| | || Sbjct 4799 GAGGAGCTCAACATGGACCTCTTCAGGAAGTGCATGGAGCCAGTGGAG-AAGTGCCTGAG 4857 Query 552086 AGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAG 552145 ||| | ||||| || || || | ||||| | |||||||||||||| || || || Sbjct 4858 GGATGCCAAGATGGACAAGAGCACTATCCATGATGTCGTGCTTGTTGGTGGTTCCACCAG 4917 Query 552146 AATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 ||| |||| | ||| | || || || ||| || ||| || || | | || || Sbjct 4918 AATCCCTAGAGTTCAGCAGCTGCTTCAGGACTTCTT-CAACGGGAAGGAGCTC--TGCAA 4974 Query 552205 GTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 | | |||| || ||||| ||||||||||||||||| || | || || ||||| ||| Sbjct 4975 GAGCATTAACCCTGATGAAGCTGTTGCCTATGGTGCTGCCGTCCAGGCTGCTATCCTTAG 5034 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 ||| | | || || | || | || | || | ||||| || || || ||||| Sbjct 5035 TGGTGAGGGGAACGAGAAGGTGCAGGACCTTCTCCTCCTTGATGTCACCCCACTGTCTCT 5094 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACT 552353 |||| | || || | |||||| | |||||| Sbjct 5095 TGGTCTTGAGACTGCTGGAGGAGTCATGACT 5125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3945648200341430