Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq68655 122 3e-23 seq539347 116 1e-21 seq398894 91.5 4e-14 seq214663 87.8 5e-13 seq542539 84.2 6e-12 >seq68655 Length=5599 Score = 122 bits (134), Expect = 3e-23 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 26142 AGTGGGAACT-ATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCA 26200 |||||||||| | || || | | || ||| | || ||||| |||||||||| |||| Sbjct 729 AGTGGGAACTTAATTTCCACA-TGGGTATGCGTCCTTGGATTGATGTTGCATATTCAGCT 787 Query 26201 CCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGT 26260 | | | || || || | ||||| |||| ||| | || ||| || ||| | Sbjct 788 CATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGCTTTTTT 847 Query 26261 GATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 26320 ||||| |||||| | || |||||||||||||| ||| ||||| | |||||||| ||||| Sbjct 848 GATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAGGCAGAG 907 Query 26321 CATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGG 26376 || || || || ||||| |||||||| ||| ||| | ||||| || ||||| || Sbjct 908 CACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGCGG 963 >seq539347 Length=3493 Score = 116 bits (128), Expect = 1e-21 Identities = 111/141 (79%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 26260 TGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 26319 |||||| |||||| | || |||||||||||||| ||||||||| | |||||||| ||||| Sbjct 3 TGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 62 Query 26320 ACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGC 26379 || || || || ||||| |||||||| ||| ||||| ||| | || ||||| || Sbjct 63 GCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGTTT 121 Query 26380 TCTTTTCGCTGCTATGCACGG 26400 || ||| |||||||||| || Sbjct 122 CCTATTCACTGCTATGCATGG 142 >seq398894 Length=318 Score = 91.5 bits (100), Expect = 4e-14 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || ||||| || | ||| || | ||||||||||| || | ||||| || Sbjct 149 TGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 208 Query 25871 TGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGAT 25930 |||| | | ||| | ||||| | ||||||||||| || || || |||||| Sbjct 209 ACCTTATTGAGTACAACTTCCGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 268 Query 25931 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || ||||| || |||||||| ||||| || || ||| | || |||||||| Sbjct 269 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 318 >seq214663 Length=1678 Score = 87.8 bits (96), Expect = 5e-13 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || | ||| || ||||| || | |||||||| | || | ||||| || Sbjct 1367 TGGATAACTAGCAGTGACAATCGTCTATACATCGGATGGTTTCGTGTTTTGATGATCCCT 1426 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | | ||| | ||| ||||| | ||||||||||| || | | ||||| Sbjct 1427 ACCTTATTGACGACAACTTC-TGTATTTATTATCGCCTTCATCGCCGCCCTTCTAGTAGA 1485 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || ||||||| ||||| || || ||| | ||| |||||||||| | || Sbjct 1486 TATTGATGGTATTCGTGAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAATATTACCTC 1545 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGA 26046 || | | |||| | ||| || ||| || | || || ||||| || ||||| Sbjct 1546 TGGTGTTATTATCCCTACTTCTGCGGCGATCAGATTGCACTTGTACCCAATTTGGGA 1602 >seq542539 Length=11310 Score = 84.2 bits (92), Expect = 6e-12 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 26651 TTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGA 26709 || || || || || || ||||| ||| ||||| || || || ||| |||||||| Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAA-GGTCGCATTATTGATACTTGGGCTGA 7035 Query 26710 TGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTT 26769 | | | ||||| |||||||| || | ||||||||||| | ||||||||||| ||||| Sbjct 7034 TATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTT 6975 Query 26770 TCCACTTGACTTAGC 26784 || || |||||||| Sbjct 6974 CCCTCTAGACTTAGC 6960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143970471684168