Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq68655 163 8e-36 seq539347 129 2e-25 seq214663 93.3 1e-14 seq542539 82.4 2e-11 seq40677 82.4 2e-11 seq398894 80.6 8e-11 >seq68655 Length=5599 Score = 163 bits (180), Expect = 8e-36 Identities = 178/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 36381 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 36440 || |||||||| || || | ||| | ||| ||||| |||||||||||||| ||||| ||| Sbjct 963 CCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 904 Query 36441 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 36500 ||||| || |||| ||||| |||||||| || || || || | ||||||||||||| | Sbjct 903 GCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAAAA 844 Query 36501 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 36560 || || ||| |||| |||||| | ||||| | |||| | ||||||||| | ||| Sbjct 843 AAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAGCTGCAACATGAGCT 784 Query 36561 GAATAAGCTACACATATCCACGGCCTCATACCTA-GTCTATAACTAAGTTCCCA 36613 ||||| || ||| ||||| || | |||||| | || | || |||||||||| Sbjct 783 GAATATGCAACATCAATCCAAGGACGCATACCCATGTGGA-AATTAAGTTCCCA 731 >seq539347 Length=3493 Score = 129 bits (142), Expect = 2e-25 Identities = 115/143 (80%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || |||||||||| ||||| || |||||||| | || ||||| | ||| ||||| Sbjct 142 CCATGCATAGCAGTGAATAGGAAACCGCCGAATACACA-GCTACACCTAACATGTGGAAT 84 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 |||||||||||||| ||||| |||||||| || |||| |||||| |||||||| || || Sbjct 83 GGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 24 Query 36477 ATACCAAGAGGCATACCATCAGA 36499 || || | ||||||||||||||| Sbjct 23 ATTCCTAAAGGCATACCATCAGA 1 >seq214663 Length=1678 Score = 93.3 bits (102), Expect = 1e-14 Identities = 183/271 (68%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 36683 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG-----ATTGGGTAGAAGTGAAGACCG 36737 |||| ||||||| || | | |||||||||||| |||||||| ||||| | | | Sbjct 1635 ATATTACCACTCATCAACAGATGCAGCTTCCCATCCCAAATTGGGTACAAGTGCAATCTG 1576 Query 36738 ATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCT 36797 || || || | |||| || | |||||| | || ||||||| || ||||| | Sbjct 1575 ATCGCCGCAGAAGTAGGGATAATAACACCAGAGGTAATATTGTTTCTGTAAAGTAAAGAA 1516 Query 36798 CCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATT 36857 || || ||| |||||||||||||||| ||||| || || | || || | || || || Sbjct 1515 CCAGAAACAAGCTCACGAATACCATCAATATCTACTAGAAGGGCGGCGATGAAGGCGATA 1456 Query 36858 AAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACA 36917 | |||| | | || || || | | ||||||||| | || | |||||| || | Sbjct 1455 ATAAATACAGAAGTTGTCGTCAATAAGGTAGGGATCATCAAAACACGAAACCATCCGATG 1396 Query 36918 TAGAGGCGGTTGTTTGTACTTGTAACCCAGT 36948 || || || |||| | || || | ||||| Sbjct 1395 TATAGACGATTGTCACTGCTAGTTATCCAGT 1365 >seq542539 Length=11310 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| || | |||| ||| || ||||||||||| || ||||| | |||||||||||||| Sbjct 6951 TCAACATCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTTATGCATAACTTCCACA 7010 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || | || |||||||| | || ||||||||||| Sbjct 7011 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGT 7045 >seq40677 Length=4500 Score = 82.4 bits (90), Expect = 2e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || | ||| ||||||||||| | || ||||| |||| |||||| | ||||| || Sbjct 3 ATTCCTAAAGGTATACCATCAGAAGAGCTTCCTTGGCCAATAGGGTAAATCAAGAAAACT 62 Query 36537 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGT 36596 || || ||||||||| | | |||||| || ||| ||||| || | |||||| || Sbjct 63 ACAGTAGCAGCTGCAACATGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAGA 122 Query 36597 CTATAACTAAGTTCCCATTGTCGTCCCA 36624 ||||||||||||| | || |||| Sbjct 123 TGGAAACTAAGTTCCCACTCACGACCCA 150 >seq398894 Length=318 Score = 80.6 bits (88), Expect = 8e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 36777 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 36836 ||||||||||| ||||| | || || |||||||||||||||||||| ||||| || ||| Sbjct 318 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 259 Query 36837 GGCGCAGCAACAAATGCAATTAAAAAT 36863 || ||||| | || || || | |||| Sbjct 258 GGGGCAGCGATGAAGGCGATAATAAAT 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147628449515278