Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq68655 167 7e-37 seq539347 152 2e-32 seq542539 100 9e-17 seq121670 91.5 4e-14 seq398894 84.2 7e-12 seq43380 84.2 7e-12 >seq68655 Length=5599 Score = 167 bits (184), Expect = 7e-37 Identities = 179/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 || |||||||| ||||| | ||| | ||||||||| |||||||||||||| ||||| ||| Sbjct 963 CCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 904 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 ||||||||||| | ||||| ||| |||||||||||||| || | ||||||||||||| Sbjct 903 GCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAAAA 844 Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGC 5781 || ||| | | || | |||||| | || || | | |||| | || ||||| | || Sbjct 843 AAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTA-GTAGCTGCAACATGAGC 785 Query 5782 TGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCA 5835 ||||||||| || |||||| || ||||| || | | || |||||||||| Sbjct 784 TGAATATGCAACATCAATCCAAGGACGCATACCCATGTGGAAATTAAGTTCCCA 731 >seq539347 Length=3493 Score = 152 bits (168), Expect = 2e-32 Identities = 119/141 (84%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 ||||||||||||| ||| | || |||||||| | ||| ||||| | ||||||||| Sbjct 142 CCATGCATAGCAGTGAATAGGAAACCGCCGAATACAC-AGCTACACCTAACATGTGGAAT 84 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 |||||||||||||| ||||| |||||||||||||| | ||||||||| |||||||||||| Sbjct 83 GGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 24 Query 5699 ATACCAAGAGGCATACCATCA 5719 || || | ||||||||||||| Sbjct 23 ATTCCTAAAGGCATACCATCA 3 >seq542539 Length=11310 Score = 100 bits (110), Expect = 9e-17 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| || | |||| || || ||||||||||||||||| |||| ||||| ||||||| | Sbjct 6951 TCAACATCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTTATGCATAACTTCCACA 7010 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| |||||||| | || ||| |||||||| || || | ||| | ||| Sbjct 7011 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATCAATAATGCGACCTTAACTATCA 7070 Query 5306 ACGACTGACTGATTGAAGTTAAA 5328 || || || |||||||| || || Sbjct 7071 ACTACAGATTGATTGAAATTGAA 7093 >seq121670 Length=2540 Score = 91.5 bits (100), Expect = 4e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| || | |||| || || ||||||||||||||||| || ||||||||||||||||| Sbjct 272 TCAACAACAGCTAAGTCTAGAGGGAAGTTGTGAGCATTATGTACGTGCATTACTTCCATA 331 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGT 5280 | |||||| ||| |||| | | ||| |||||||| Sbjct 332 CGAAGGTTAGCATGGTTAATGTTATCAGCCCAAGT 366 >seq398894 Length=318 Score = 84.2 bits (92), Expect = 7e-12 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 5999 TTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGG 6058 ||||||||||| |||| ||| || | || || ||||| || || || || || ||||| Sbjct 318 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 259 Query 6059 GGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATT 6118 || ||||| | ||| || | |||||| | | ||||| | || | | || ||||| Sbjct 258 GGGGCAGCGATGAAGGCGATAATAAATACGGAAGTTGTACTCAATAAGGTAGGGATCATC 199 Query 6119 AAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||| ||||| || | || || | || | |||||||| | ||||| ||||| Sbjct 198 AAAACACCGAACCATCCGATGTAAAGATGATTTTCAGTGCTAGTTATCCAGTTGCAGAA 140 >seq43380 Length=4142 Score = 84.2 bits (92), Expect = 7e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 5201 TCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACG 5259 || || ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| Sbjct 2440 TCTAGAGGGAAGTTGTGAGCATTACGTCCGTGCATTACTTCCATACCAAGGTTAGCACG 2498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149782417577202