Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq68655 158 4e-34 seq539347 129 2e-25 seq542539 87.8 5e-13 seq214663 87.8 5e-13 seq398894 80.6 8e-11 >seq68655 Length=5599 Score = 158 bits (174), Expect = 4e-34 Identities = 177/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 25861 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 25920 || |||||||| || || | ||| | ||| ||||| |||||||||||||| ||||| ||| Sbjct 963 CCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 904 Query 25921 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 25980 ||||| || |||| ||||| |||||||| || || || || | ||||||||||||| | Sbjct 903 GCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAAAA 844 Query 25981 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 26040 || || ||| |||| |||||| | ||||| | |||| | ||||||||| | ||| Sbjct 843 AAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAGCTGCAACATGAGCT 784 Query 26041 GAATAAGCTACACATATCCACGGCCTCATGCCTA-GTCTATAACTAAGTTCCCA 26093 ||||| || ||| ||||| || | ||| || | || | || |||||||||| Sbjct 783 GAATATGCAACATCAATCCAAGGACGCATACCCATGTGGA-AATTAAGTTCCCA 731 >seq539347 Length=3493 Score = 129 bits (142), Expect = 2e-25 Identities = 115/143 (80%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || |||||||||| ||||| || |||||||| | || ||||| | ||| ||||| Sbjct 142 CCATGCATAGCAGTGAATAGGAAACCGCCGAATACACA-GCTACACCTAACATGTGGAAT 84 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 |||||||||||||| ||||| |||||||| || |||| |||||| |||||||| || || Sbjct 83 GGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 24 Query 25957 ATACCAAGAGGCATACCATCAGA 25979 || || | ||||||||||||||| Sbjct 23 ATTCCTAAAGGCATACCATCAGA 1 >seq542539 Length=11310 Score = 87.8 bits (96), Expect = 5e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||||||| |||||||||||||| || ||||| | |||||||||||||| || | || Sbjct 6960 GCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTTATGCATAACTTCCACACCAAGGTTA 7019 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538 |||||||| | || ||||||||||| Sbjct 7020 GCACGGTTGATGATATCAGCCCAAGT 7045 >seq214663 Length=1678 Score = 87.8 bits (96), Expect = 5e-13 Identities = 179/266 (67%), Gaps = 5/266 (2%) Strand=Plus/Minus Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAG-----ATTGGGTAGAAGTGAAGACCGATTGC 26222 ||||||| || | | |||||||||||| |||||||| ||||| | | ||| || Sbjct 1630 ACCACTCATCAACAGATGCAGCTTCCCATCCCAAATTGGGTACAAGTGCAATCTGATCGC 1571 Query 26223 GTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGA 26282 ||| | |||| || | || ||| | || ||||||| || ||||| | || || Sbjct 1570 CGCAGAAGTAGGGATAATAACACCAGAGGTAATATTGTTTCTGTAAAGTAAAGAACCAGA 1511 Query 26283 GACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAA 26342 ||| |||||||||||||||| ||||| || || | || || | || || || | ||| Sbjct 1510 AACAAGCTCACGAATACCATCAATATCTACTAGAAGGGCGGCGATGAAGGCGATAATAAA 1451 Query 26343 TGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAG 26402 | | | || || || | | ||||||||| | || | |||||| || | || || Sbjct 1450 TACAGAAGTTGTCGTCAATAAGGTAGGGATCATCAAAACACGAAACCATCCGATGTATAG 1391 Query 26403 GCGGTTGTTTGTACTTGTAACCCAGT 26428 || |||| | || || | ||||| Sbjct 1390 ACGATTGTCACTGCTAGTTATCCAGT 1365 >seq398894 Length=318 Score = 80.6 bits (88), Expect = 8e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 ||||||||||| ||||| | || || |||||||||||||||||||| ||||| || ||| Sbjct 318 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 259 Query 26317 GGCGCAGCAACAAATGCAATTAAAAAT 26343 || ||||| | || || || | |||| Sbjct 258 GGGGCAGCGATGAAGGCGATAATAAAT 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149138739074732