Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq108278 120 2e-22 seq244586 113 4e-20 seq138816 107 1e-18 seq1486945 105 5e-18 seq529058 98.7 8e-16 seq558297 96.9 3e-15 seq122391 89.7 4e-13 >seq108278 Length=2337 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || || ||||||||||| | ||| | | | || || Sbjct 770 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAGAGTGCGGCCGTCCTCA 829 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| |||| |||||| || || || |||||||| || ||||| || Sbjct 830 AGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGG 889 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | |||||||| | || || ||||| |||| || ||| Sbjct 890 ATCTTCGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTGATGGTCTTG 949 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || ||||| |||||||| Sbjct 950 CCGGTGAGTGTCTTCACAAAGATCTGCAT 978 >seq244586 Length=1852 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || || ||||| || || | || | | |||| || | ||| Sbjct 287 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGC 228 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||||| || || || || ||||| || || || || || || Sbjct 227 TTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGTATGCCCTCCTTGTCCTGGATCTTG 168 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||||||| ||||| ||||| |||| || |||||||| Sbjct 167 GCCTTCACATTGTCGATGGTGTCAGACGACTCCACCTCAAGGGTGATTGTCTTGCCGGTG 108 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 | || || ||||| ||||||||| | | ||||| Sbjct 107 AGGGTCTTAACAAAAATCTGCATGCCTCCACGAAG 73 >seq138816 Length=1792 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || |||| || | | |||| || | ||| Sbjct 1545 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCATCCTCGAGCTGC 1604 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || |||| ||||| || || || |||||||| || || || || || || Sbjct 1605 TTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 1664 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||||| | ||||| || || |||| || |||||||| Sbjct 1665 GCCTTCACATTATCGATGGTGTCAGATGACTCCACCTCCAGGGTGATGGTCTTGCCGGTG 1724 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || ||||||||||||||| Sbjct 1725 AGGGTCTTCACAAATATCTGCATG 1748 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| || || || ||||| || || | || | | |||| || | ||| Sbjct 1317 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGGCCATCCTCAAGCTGC 1376 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| || || || |||||||| || || || || || || Sbjct 1377 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 1436 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || || |||| || |||||||| Sbjct 1437 GCCTTCACATTGTCAATGGTGTCCGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTC 1496 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 1497 AGGGTCTTGACAAATATCTGCAT 1519 >seq1486945 Length=5508 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || || || || ||||| || || | || | |||| || | |||| Sbjct 3419 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCATCCTCAAGTTGC 3360 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| ||||| || || || ||||||||||| || || || || || Sbjct 3359 TTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTG 3300 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || ||||| |||| || |||||||| Sbjct 3299 GCCTTCACATTGTCAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTG 3240 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 3239 AGGGTCTTGACAAAGATCTGCAT 3217 >seq529058 Length=7459 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || || | || | |||| || | |||| Sbjct 1095 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGTCCATCCTCAAGTTGC 1036 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | |||||| || || || || ||||| || ||||| || || || Sbjct 1035 TTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTG 976 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||||||||| || || || || |||| || ||||| || Sbjct 975 GCCTTGACGTTGTCGATAGTGTCAGACGACTCAACCTCCAGGGTGATGGTCTTGCCAGTG 916 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||| || || || ||||||||| Sbjct 915 AGAGTCTTCACGAAGATCTGCATG 892 >seq558297 Length=3815 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || || ||||| || || | || | | |||| || | ||| Sbjct 1615 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCGAGCTGC 1556 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| || || || |||||||| || || || || || ||| Sbjct 1555 TTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTT 1496 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||||| || | |||| || |||||||| Sbjct 1495 GCCTTCACGTTGTCAATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCGGTG 1436 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 1435 AGGGTCTTGACGAAAATCTGCAT 1413 >seq122391 Length=5611 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||||||||||| || || || || |||||||| || | ||| | |||| || Sbjct 3148 ACTAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCCAAAGTGCGCCCATCCTCA 3089 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| || | | ||| || || || || || || || || || || Sbjct 3088 AGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGG 3029 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| | || | |||||||| | || || || ||||| | || || Sbjct 3028 ATTTTCGCTTTGACATTGTCAATGGTGTCAGAGCTCTCGACCTCTAGAGTTATGGTCTTC 2969 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| ||||| || Sbjct 2968 CCAGTGAGGGTCTTGACAAAAATCTGTAT 2940 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | || | ||| | || ||||| || || ||||| || ||||||||||| Sbjct 3394 CCACCTCTCAGGCGAAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCC 3335 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||||| || ||||| || | | ||| || || ||||| Sbjct 3334 AATGTGCGCCCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 3275 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || || || | | | || | ||||| || | || || Sbjct 3274 ATACCCTCCTTGTCCTGGATCTTGGCCTTAATATTATCAATGGTGTCGGAGCTCTCAACC 3215 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | || || || |||| || |||||||| |||||||| Sbjct 3214 TCAAGTGTAATGGTCTTCCCAGTTAGTGTCTTTACAAAGATCTGCAT 3168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 388639319859399