Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq68655 158 1e-33 seq539347 125 8e-24 seq542539 95.1 1e-14 seq214663 95.1 1e-14 seq398894 91.5 2e-13 seq121670 82.4 8e-11 >seq68655 Length=5599 Score = 158 bits (174), Expect = 1e-33 Identities = 192/259 (74%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || || | | ||||||||||||||||| ||||||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 162892 TCTGCACCAGTATCTGCAGC-ATT--CGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGT 162948 || || | || |||||| | | ||| | |||||| | || ||| | ||| ||| Sbjct 782 TCAGCTCATGT---TGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTA 838 Query 162949 TCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTC 163008 || | ||| | |||||| | || || ||||||||||| ||| ||| | || ||| Sbjct 839 AGCTTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTC 898 Query 163009 CAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTC 163068 || ||||||||||||||||| ||||| || ||||| ||| | || | || ||||||||| Sbjct 899 CAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTC 958 Query 163069 GGTGGTTCACTCTTTAGTG 163087 || ||||| || || |||| Sbjct 959 GGCGGTTCCCTATTCAGTG 977 >seq539347 Length=3493 Score = 125 bits (138), Expect = 8e-24 Identities = 133/174 (76%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 162955 TCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCA 163014 ||||| | |||||| | || || ||||||||||| |||| ||| | || ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 163015 GAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGT 163074 |||||||||||||| ||||| || ||||| ||| | || || || |||||||||| ||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 163075 TCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAA 163128 | || || | ||||||||| ||||| | || || ||| | | ||||| ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAA 173 >seq542539 Length=11310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 163348 TTCAACTTCAACCAATCCGTCGTTGACGCAGGT--GGTAAAGTGATTCCTACTTGGGCAG 163405 ||||| ||||| ||||| || ||||| || | ||| | ||| ||||||||| | Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGAT--AGTTAAGGTCGCATTATTGATACTTGGGCTG 7036 Query 163406 ATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACT 163465 ||||| | ||| | || |||||| ||||||||||||| | |||||||||||||||| Sbjct 7035 ATATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACT 6976 Query 163466 TCCCACTTGACCTTGCTGCTGCTGA 163490 |||| || ||| | |||| || ||| Sbjct 6975 TCCCTCTAGACTTAGCTGATGTTGA 6951 >seq214663 Length=1678 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/250 (68%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||||||||| | || |||| ||||| |||| |||||||||||| ||| | | | Sbjct 1381 TGACAATCGTCTATACATCGGATGGTTTCGTGTTTTGATGATCCCTACCTTATTGACGAC 1440 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 | | || || || || || ||||| || || | || ||| ||||| |||||||| | Sbjct 1441 AACTTCTGTATTTATTATCGCCTTCATCGCCGCCCTTCTAGTAGATATTGATGGTATTCG 1500 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 || | |||| | ||||| | || || | ||||| || | |||||||| | | | || Sbjct 1501 TGAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAATATTACCTCTGGTGTTATTATCCC 1560 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTAT-----CTGGGAAGCAGCAACTCTT 162756 || ||| || || | | ||||| || || || |||||||| ||| || || Sbjct 1561 TACTTCTGCGGCGATCAGATTGCACTTGTACCCAATTTGGGATGGGAAGCTGCATCTGTT 1620 Query 162757 GATGAGTGGT 162766 |||||||||| Sbjct 1621 GATGAGTGGT 1630 >seq398894 Length=318 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCA 162595 |||| ||||||||||| |||||||||||| ||| | || | |||||| | || | Sbjct 180 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATT--GAGTA-CAACTTCCGTATTTA 236 Query 162596 TCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAG 162655 | || || ||||| || || |||||||| ||||| |||||||| | || |||||| | | Sbjct 237 TTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTG 296 Query 162656 GTTCACTTCTCTATGGTAACAA 162677 |||| | || ||||| ||||| Sbjct 297 GTTCTTTACTTTATGGAAACAA 318 >seq121670 Length=2540 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440 ||| | || ||| ||||||||| |||| | ||||| || ||| |||||||||| Sbjct 381 GGTCATGTAATTAATACTTGGGCTGATAACATTAACCATGCTAACCTTCGTATGGAAGTA 322 Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 ||||||| | |||||||||||||||||| || ||| | |||| || ||| Sbjct 321 ATGCACGTACATAATGCTCACAACTTCCCTCTAGACTTAGCTGTTGTTGA 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542149573753080