Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq507140 141 1e-28 seq68655 140 4e-28 seq216476 132 5e-26 seq539347 114 1e-20 seq466961 109 6e-19 seq37697 107 2e-18 seq428484 95.1 1e-14 seq550293 93.3 5e-14 seq182135 89.7 6e-13 >seq507140 Length=321 Score = 141 bits (156), Expect = 1e-28 Identities = 180/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 165012 ATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTC 165071 |||| ||||||||| || |||||||| || ||||||| || || ||||||| || Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 165072 GCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCAC 165131 || ||| ||||| || ||| | || ||| ||||| | | ||| | |||||||| || Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 165132 AACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTG 165191 || ||||| | ||||| || ||||||||||| ||||| | | || || | || || Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 165192 CTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCA 165251 |||| ||||||||||||| || || ||||| || ||| ||||| || || ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 165252 AATACCTT 165259 |||||||| Sbjct 289 AATACCTT 296 >seq68655 Length=5599 Score = 140 bits (154), Expect = 4e-28 Identities = 182/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 163225 GGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATAC 163284 || ||||| ||||||||| | | | | |||||||| || ||||| ||| ||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 163285 TCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCT 163344 || || | ||||||||| | | || | ||| || | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 163345 TTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAA 163404 || | ||| | ||||| | || |||||||| || |||||| ||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 163405 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGT 163464 ||||||||||||||||| ||||| || ||||| ||||| || | |||||||| ||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 163465 GGATCACTCTTC 163476 || || || ||| Sbjct 962 GGTTCCCTATTC 973 >seq216476 Length=3150 Score = 132 bits (146), Expect = 5e-26 Identities = 200/279 (72%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 164934 GGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGTCCTTACAATGC 164992 ||||||||| | ||||| ||||| | | || ||| || || | || | ||| ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 164993 TATTGCGTTCTCTGGTCCTATTGCTGTTTTT-GTCAGCGTCTTCCTTATCTACCCACTGG 165051 || | ||||||||||| |||| ||||||| || ||| |||||| | || ||||||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 165052 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGT 165111 | || || ||||||| || | ||| ||||| || ||||| || ||| ||||| | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 165112 TGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAG 165171 | ||| ||| |||||| || || |||| | ||||| || ||||||||||| ||||| Sbjct 2822 TTTTC-TTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGCCA 2764 Query 165172 GTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAG 165210 || || || | || | | || |||||||||||| Sbjct 2763 AAATATTAGGCGTGGCTCTACGATGCACTATTCATGGAG 2725 >seq539347 Length=3493 Score = 114 bits (126), Expect = 1e-20 Identities = 112/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 163348 TCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCA 163407 ||||| | ||||| | || |||||||| || ||||||| ||| |||| ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 163408 GAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGA 163467 |||||||||||||| ||||| || ||||| ||||| || || ||| |||| ||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 163468 TCACTCTTCTCGGCAATGCATGG 163490 | || ||| | || |||||||| Sbjct 120 TTCCTATTCACTGCTATGCATGG 142 >seq466961 Length=778 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 165483 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGT 165542 |||||||| ||||||||||| ||||| |||||||| || || || || || || | ||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 165543 GCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTG 165602 || ||| ||||| || ||||| || |||||||| |||| ||||| ||||| || | Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 165603 CCTAGAGGCAACGCCCTTTAATAAA 165627 || | || ||||| ||||||| || Sbjct 657 CCACGTGGAAACGCTCTTTAATGAA 633 >seq37697 Length=321 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 164984 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTA 165043 ||| ||||| || | ||||||||| | |||| ||||||||| ||| |||||||| || Sbjct 2 TTATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTA 61 Query 165044 CCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAG 165103 |||||||| || || | ||||| || | ||| ||||| | || || || ||| | Sbjct 62 TCCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTG 121 Query 165104 ATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGG 165163 ||| | | ||| ||| |||||| || || |||| | ||||| || ||||||| ||| Sbjct 122 TTTCATCCTTTTC-TTCTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGG 180 Query 165164 TGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCAC 165214 ||||| || || || | || | | || ||||||||||||| || Sbjct 181 AGTTGCCTAAATATTAGGCGTGGCTCTACGATGCACTATTCATGGAGTGAC 231 >seq428484 Length=423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 165249 GCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 165308 ||||||||||| || ||| | | || || || ||||| |||||||| ||||||||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 165309 GCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCAt 165368 || |||||||| ||||| || ||||| || |||| ||||| || || || ||| | ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 165369 ttttt 165373 |||| Sbjct 337 CTTTT 341 >seq550293 Length=8024 Score = 93.3 bits (102), Expect = 5e-14 Identities = 174/252 (69%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTA 164976 ||| || || | ||| ||||||||| | | | ||||| || || || ||| | | Sbjct 7586 TGCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT- 7528 Query 164977 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 165036 | || |||| ||||| || |||||||| |||| |||||| |||| | | | | ||| Sbjct 7527 TACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATTCT 7469 Query 165037 TTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 165096 |||| || ||||| || || || ||||||| || || || || | | ||| | | Sbjct 7468 TTATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGA 7409 Query 165097 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATA 165156 | ||||||||| | | ||| | ||| | || || || |||| | ||||| || |||| Sbjct 7408 TATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATA 7349 Query 165157 TGATGGGTGTTG 165168 ||||||| |||| Sbjct 7348 TGATGGGAGTTG 7337 >seq182135 Length=1057 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 165479 AGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACT 165538 ||| |||||||| ||||||||||| ||||| |||||||| || || || || || || | Sbjct 717 AGCGGAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTAT 776 Query 165539 ACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCC 165589 ||||| || ||||| || ||||| || |||||||| |||| ||||| Sbjct 777 TCGTGCGTGAATGGCAACTCAAGATCAGCCTCATGAAAATCTTATATTCCC 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552074192915160