Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq542047 293 4e-74 seq4015 86.0 1e-11 >seq542047 Length=2783 Score = 293 bits (324), Expect = 4e-74 Identities = 585/860 (68%), Gaps = 19/860 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 2038 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 1979 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCC-GTGTCAGGCCCATCTGTTCCAGCA 47957 ||| || ||| ||||||| | ||| || | | || ||| |||| | |||| Sbjct 1978 CATCCAGTCGAACGGGTTGGTGGCGTTGTAGAGCTTGTTGCAG-CCCAGCGCCATGAGCA 1920 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||||||||| | ||||||| | ||||||||| | ||| | Sbjct 1919 GGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCG 1860 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | || | || ||||||| ||||||| | |||||| || || |||| Sbjct 1859 CGCAGGGGAGCGCGTCACAGACAAACTCCCTCTCTATGTCCACGGCCTCAGAGACGATCT 1800 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 ||||||||||| | | ||| ||||||| || | ||||| | |||||| | Sbjct 1799 CGAAGACGCGGGACTCGTCGAGCTTGCCGCGCAGGA---TGTCGTAGAGGAGGCAGGCGA 1743 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || |||| Sbjct 1742 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 1683 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| |||| || ||||||||||| || || ||| ||||| |||||||||||||||| Sbjct 1682 TGAGGCCCCGCTTCTTGAGCCAGAAGATGGCACAGAAGGAGCCCGAGAAGAAGATGCCCT 1623 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCAG 48316 | || ||||| ||| || | ||| | |||||| | | | | ||||||| Sbjct 1622 CAACGCAGGCGAAGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAG 1567 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA-- 48374 ||| |||||||| ||||| | | ||| || || || ||||| ||||||| Sbjct 1566 CGAAGGGCCCAGTCGGCCTTGCGGCGCACGGCTGGGATGGTGTCGATGGCGCGGAAGAGG 1507 Query 48375 -GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | ||| ||| | |||| | ||||| || ||| | ||||||||| Sbjct 1506 CGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCG 1450 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || ||||||||||| |||||||||||||||||||| |||||| Sbjct 1449 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGC 1390 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| || || ||||| || || || || || || || ||| Sbjct 1389 ACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAG 1330 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCCC 48610 ||||| || || || | ||| |||||||||| || || ||| | | |||| Sbjct 1329 AAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTCGTGTCCCAGTGG 1270 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 | |||| | |||||||| || || | |||||||||||||| | || || ||| Sbjct 1269 CGGGCGTCGGAGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGACGCCACCGCCTTCTTG 1210 Query 48671 TACATGCCCCATATGTCCGG 48690 || | |||| || | ||| Sbjct 1209 TAGAACTCCCAGATCTGCGG 1190 >seq4015 Length=6327 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || |||||||| || | || ||||||||| || |||||||| |||| Sbjct 3626 GTATATGTTAGATGTGTAGGGTTCAAAGCACTCGTTGTTGCCAAGAATCTGACTAGTGGA 3567 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCC 213049 || |||||||||||||||||||| ||| ||| || ||||| Sbjct 3566 AGCAGTGGGCATGGGAGCCACCAGAAGAGAGTTTCTTACTCC 3525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913115150618880