Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq542047 224 2e-53 >seq542047 Length=2783 Score = 224 bits (248), Expect = 2e-53 Identities = 568/857 (66%), Gaps = 27/857 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 1196 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTC 1255 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | |||| || | || ||||| ||||||| || || || Sbjct 1256 TCCTCCGACGCCCGCCACTGGGACACGACGCTCTCCAACGACGAGCGCCACTTCATCTCC 1315 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | || Sbjct 1316 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 1375 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||||| | |||||||| |||||||| |||||| Sbjct 1376 TTCATGTCCGACGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATC 1435 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| || ||| | ||| ||||| |||| || | Sbjct 1436 GAGAACATCCACTCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTC 1495 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG-AAGGCGCG 25832 |||| || || || || | |||||||| ||| |||||| | | ||||| Sbjct 1496 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT-CCCAGCCGTGCGCCGCAAGGCCGA 1554 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| | |||||| || || | |||||| || |||||| | || |||| Sbjct 1555 CTGGGCCCTTCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCATCGTCGCCT 1610 Query 25892 TTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 | || ||| || ||||||||||| ||| || || || |||||||||||||||||| Sbjct 1611 TCGCCTGC-GTTGAGGGCATCTTCTTCTCGGGCTCCTTCTGTGCCATCTTCTGGCTCAAG 1669 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 1670 AAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 1729 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 || ||| | || || |||||||| |||||| | | | ||| | ||| | || | Sbjct 1730 CTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACATCCTGCGCGGCAAGC--TC-GAC 1783 Query 26071 GAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 ||| | ||||| | ||| || ||||| ||||| || |||| ||||||| Sbjct 1784 GAGTCCCGCGTCTTCGAGATCGTCTCTGAGGCCGTGGACATAGAGAGGGAGTTTGTCTGT 1843 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | ||||||||| | ||||||||||| ||||| ||| Sbjct 1844 GACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAG 1903 Query 26188 TATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CT 26244 | || ||||||| ||||| || | |||||| | || ||||||| |||| | Sbjct 1904 TTCGTCGCCGACCGCCTGCTCATGGC-GCTGGGCTGCAACAAGCTCTACA--ACGCCACC 1960 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||||||||||| ||||| ||| ||| || | || |||||||||||||| || ||| Sbjct 1961 AACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAG 2020 Query 26305 AGGGTCGGCGACTATCA 26321 | |||||||| || || Sbjct 2021 CGCGTCGGCGAGTACCA 2037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910480295974080