Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq68655 210 2e-49 seq507140 178 1e-39 seq216476 150 2e-31 seq539347 149 6e-31 seq550293 131 2e-25 seq680530 113 5e-20 seq40677 111 2e-19 seq428484 102 8e-17 seq466961 100 3e-16 seq1492040 93.3 4e-14 seq1484923 87.8 2e-12 seq182135 84.2 2e-11 >seq68655 Length=5599 Score = 210 bits (232), Expect = 2e-49 Identities = 197/251 (78%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 8581 GGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 8640 |||||||| ||||||||| || || | | || |||||||||||||| ||||||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 8641 TCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCG 8700 || |||| |||||| ||| || ||||| | ||| | | || ||| ||||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 8701 TTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAG 8760 || | ||||||||||||| | || ||||| ||||| |||||| |||| |||| |||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 8761 GCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGC 8820 || |||||||||||||| ||||| || ||||||||| | ||| | |||||||| |||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 8821 GGATCTCTCTT 8831 || || || || Sbjct 962 GGTTCCCTATT 972 >seq507140 Length=321 Score = 178 bits (196), Expect = 1e-39 Identities = 202/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 10220 ATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTT 10279 |||| ||||||||| ||| ||||| || |||||||| | || ||| ||||||||||| Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 10280 GCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCAT 10339 ||||||||||| ||||| || |||| || || ||| | || ||| |||| || |||||| Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 10340 AATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTC 10399 ||||||||| | || || || ||||||||||||||||| | || | || | ||| || Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 10400 CTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCA 10459 |||| || || || |||| || ||||||||||| || | | | || || || ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 10460 AACACTTTCAAAGCTTTTGATAGCACTCAAG 10490 || || ||| |||||| | ||||||| Sbjct 289 AATACCTTCTGTGCTTTTAACCCAACTCAAG 319 >seq216476 Length=3150 Score = 150 bits (166), Expect = 2e-31 Identities = 177/237 (75%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 10142 GGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCT 10201 || || ||||||||||| ||||| | | ||| ||| | |||| ||| ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGTTGCGACTTTATAATGCA 2942 Query 10202 ATCGCGTTTTCTGGGCCTATTGCTGTTTTT-GTCAGTGTTTTCCTCATCTATCCACTCGG 10260 ||| | || ||||| || |||| ||||||| || || ||||| | |||||||| || Sbjct 2941 ATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGGG 2882 Query 10261 ACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCT 10320 || ||| |||||||||||| ||||||||| || || || ||||| || | ||| | || Sbjct 2881 GCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCCT 2822 Query 10321 CTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGC 10377 ||| || | || ||||||||||||| | | || || || ||||||||||||||||| Sbjct 2821 TTTCTTCTA-GGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq539347 Length=3493 Score = 149 bits (164), Expect = 6e-31 Identities = 129/159 (81%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 8704 TCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCT 8763 ||||||||||||||| | || ||||| ||||| ||||||| |||| |||| |||||||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 8764 GAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGA 8823 |||||||||||||| ||||| || ||||||||| | ||||| ||| |||| |||||||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 8824 TCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCT 8862 | || || | || ||||||||||| | || || ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq550293 Length=8024 Score = 131 bits (144), Expect = 2e-25 Identities = 173/239 (72%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 10138 AATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAA 10197 ||| || || ||||||| | ||||| || || | | || | | ||| |||| || Sbjct 7574 AATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAATTACGATCTTATAA 7515 Query 10198 TGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACT 10257 ||| ||| |||| ||| | || |||||| |||| | | | | ||| | || |||||||| Sbjct 7514 TGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTA-TCTATTCTTTATTTATCCACT 7456 Query 10258 CGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCT 10317 ||| || ||| ||||||||||||| |||||||| || | || |||| || | ||| | Sbjct 7455 CGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGATATTTAGATTCAT 7396 Query 10318 TCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTG 10376 | ||| |||| | || |||||||||| | | || || || |||||||||||||||| Sbjct 7395 CATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATATGATGGGAGTTG 7337 >seq680530 Length=586 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 8473 CACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCT 8532 ||||| ||||| || |||||||| || | | |||||||||| | ||||| ||||||||| Sbjct 62 CACTTTTACCCAATTTGGGAAGCTGCATTTGCTGATGAGTGGTTATACAATGGTGGTCCT 121 Query 8533 TACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGG 8592 || |||| | ||| | ||||| | ||||| || | ||||||||||||||| ||| Sbjct 122 TATGAGCTAATTGTTCTAAACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGG 181 Query 8593 GAACTTTCTTACCGCCTTGGCATGC 8617 |||||| || ||| || ||||||| Sbjct 182 GAACTTAGTTTCCGTCTGGGCATGC 206 >seq40677 Length=4500 Score = 111 bits (122), Expect = 2e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 8575 TATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTT 8634 |||||||||||||| ||||||||| || || || || |||||||||||||| |||| Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGATTGCTGTT 95 Query 8635 GCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAA 8694 ||||| || ||| |||||| |||||| ||| || ||| | | || ||| |||| ||| Sbjct 94 GCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGGCCAA 35 Query 8695 GGTTCGTTCTCTGATGGTATGCCTCTTGGTATCT 8728 || | ||||||||||| ||| | || |||| Sbjct 34 GGAAGCTCTTCTGATGGTATACCTTTAGGAATCT 1 >seq428484 Length=423 Score = 102 bits (112), Expect = 8e-17 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 10457 GCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACT 10516 ||||| || ||| |||||| | |||||||| ||||| || ||||| ||||| ||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 10517 GCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCAT 10576 |||||||| || |||||||| || ||||| |||||||| ||||||||| ||| | ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 10577 TTCTTTAT 10584 | ||||| Sbjct 337 CT-TTTAT 343 >seq466961 Length=778 Score = 100 bits (110), Expect = 3e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 10691 GAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGT 10750 |||||||||||||||||||| ||||| || || ||||| ||| | ||||| ||| ||||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 10751 GCATGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTT 10810 || ||||||||| | || || || || |||| || | ||||| ||||| ||||| Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 10811 CC 10812 || Sbjct 657 CC 656 >seq1492040 Length=4344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 10237 TGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGT 10296 ||| ||||| || |||||||| | || ||| ||||||||||||| || ||||| | ||| Sbjct 1181 TGTATTCCTTATTTATCCACTGGAGCAATCTGGTTGGTTCTTTGCACCTAGTTTTGACGT 1240 Query 10297 CGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 10352 || ||||| || ||| | || ||| |||| || ||||||||||||||| ||| Sbjct 1241 AGCAGCGATATTTTCATTCATCCTTTTCGTCCAAGGATTTCATAATTGGACGTTCA 1296 >seq1484923 Length=1633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 10521 ACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCT 10580 |||| || |||||||| || ||||| |||||||| ||||||||| ||| | ||||||| Sbjct 1541 ACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCT 1600 Query 10581 TTATGCTGTTTGTACCTGTTATGGGTCTTTGGA 10613 ||||||| |||||||| || | ||| | |||| Sbjct 1601 TTATGCTATTTGTACCCGTCACCGGTTTATGGA 1633 >seq182135 Length=1057 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/127 (75%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 10691 GAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGT 10750 |||||||||||||||||||| ||||| || || ||||| ||| | ||||| ||| ||||| Sbjct 721 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 780 Query 10751 GCATGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTT--- 10807 || || |||||| | || || || || |||| || | ||||| | || ||| Sbjct 781 GCGTGAATGGCAACTCAAGATCAGCCTCATGAAAATCTTATATTCCCTAAGGAGGTTTGA 840 Query 10808 CTTCCTA 10814 ||||||| Sbjct 841 CTTCCTA 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506268499608000