Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq122391 114 8e-20 seq539905 100 2e-15 seq553040 98.7 6e-15 seq539222 95.1 8e-14 seq1491419 89.7 3e-12 seq2649 86.0 4e-11 >seq122391 Length=5611 Score = 114 bits (126), Expect = 8e-20 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || |||||||| | || | | |||||| ||||| ||||||||||| ||||| | ||| Sbjct 2890 TTGTAATCAGCCAAGGTGCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATAAGCCTCTGT 2831 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || |||||||| || |||||||| |||||||| ||| ||| ||||| ||||| Sbjct 2830 TGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCT 2771 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || ||||| || ||||| || |||||||| ||||| || ||||| || Sbjct 2770 GAACTCTCAA-CCTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACAAAAATCTG 2715 >seq539905 Length=5437 Score = 100 bits (110), Expect = 2e-15 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||||||||||||||| || ||||| || || | |||||| || ||||| || | | Sbjct 4980 TTACTGTTCCAGCATACTTCAATGACTCGCAGAGAACAGCAACAAAGGATGCTGGCCGTA 5039 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 ||||||| || | ||| | || ||||| ||||| ||||| || || | |||||||||| Sbjct 5040 TTGCAGGGCTGGAAGTTCTCCGCATTATAAATGAGCCAACTGCTGCATCTCTTGCTTATG 5099 Query 474864 GTCTTGATAAGAA 474876 || |||| ||||| Sbjct 5100 GTTTTGAGAAGAA 5112 >seq553040 Length=6571 Score = 98.7 bits (108), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || || || || || |||||||| || | || || || || |||| Sbjct 4308 ATGCCGTTGTCACCGTGCCTGCTTACTTCAATGATTCCCAGAGGCAGGCTACCAAGGATG 4367 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| ||||||||||| | ||||| || || || |||||||| |||||| Sbjct 4368 CTGGTGTTATTGCTGGTCTTAATGTGATGCGTATCATCAACGAGCCAACAGCTGCCGCAA 4427 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 4428 TTGCCTATGGTCTTGACAAGAA 4449 >seq539222 Length=7428 Score = 95.1 bits (104), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || || ||||| || || | || || || || |||| Sbjct 2801 ATGCTGTCGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 2742 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| || || |||||| | || || || ||||| ||||| || || || Sbjct 2741 CTGGAGTGATTGCTGGCCTAAATGTTATGCGCATCATCAATGAGCCAACTGCTGCTGCTA 2682 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 2681 TTGCTTATGGTCTTGACAAGAA 2660 >seq1491419 Length=5127 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || ||||| || ||||| || || | || || || || |||| Sbjct 2384 ATGCTGTTGTCACTGTACCTGCATACTTCAATGACTCGCAGAGGCAGGCTACCAAGGATG 2443 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| || | ||||| | ||||| || || || |||||||| || || Sbjct 2444 CTGGAGTCATTGCTGGCATCAATGTCCTTCGTATCATCAACGAGCCAACAGCTGCTGCCA 2503 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 2504 TTGCTTATGGTCTTGACAAGAA 2525 >seq2649 Length=10255 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || ||||| || ||||| || || | || || || || |||| Sbjct 6296 ATGCTGTTGTCACTGTACCTGCATACTTCAATGACTCGCAGAGGCAGGCTACCAAGGATG 6355 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| || | ||||| | ||||| || || || |||||||| || || Sbjct 6356 CTGGTGTCATTGCTGGCATCAATGTCCTCCGTATCATCAACGAGCCAACAGCTGCTGCCA 6415 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 6416 TTGCTTATGGTCTTGACAAGAA 6437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3200332112327636