Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq68655 178 1e-39 seq539347 140 3e-28 seq507140 118 1e-21 seq532379 111 2e-19 seq542539 100 3e-16 seq216476 100 3e-16 seq40677 98.7 1e-15 seq680530 95.1 1e-14 seq466961 95.1 1e-14 seq550293 91.5 2e-13 seq1484923 87.8 2e-12 seq337787 86.0 7e-12 seq207681 86.0 7e-12 seq1291308 82.4 8e-11 seq407668 82.4 8e-11 >seq68655 Length=5599 Score = 178 bits (196), Expect = 1e-39 Identities = 193/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 161209 GGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATAC 161268 |||||||||||||||||| || || |||| ||||||||||||||| || ||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 161269 TCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCT 161328 || |||| ||| || || | | ||| | ||| || | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 161329 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAA 161388 || | ||||| |||||| | || ||||||||||| |||||| ||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 161389 GCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGC 161448 |||||||||||||| || ||||| || ||||| ||| | || |||| ||||| || ||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 161449 GGTTCTCTGTTCAGTG 161464 ||||| || ||||||| Sbjct 962 GGTTCCCTATTCAGTG 977 >seq539347 Length=3493 Score = 140 bits (154), Expect = 3e-28 Identities = 127/159 (80%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 161332 TCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCA 161391 ||||||| |||||| | || ||||||||||| ||||||| ||| |||| ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 161392 GAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGT 161451 ||||||||||| || ||||| || ||||| ||| | || ||||| |||| || |||||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 161452 TCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCT 161490 | || |||| ||| ||||| ||||| |||| |||||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq507140 Length=321 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 162522 ATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTC 162581 |||| ||| || ||| ||| || ||||| ||||| ||| ||||| |||||||| Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 162582 GCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCAT 162641 || ||| || || || ||| | || || |||||| | || ||| ||||||| || ||| Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 162642 AACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTG 162701 || |||||| | || || ||||| |||||||| || || | | | |||| || || Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 162702 CTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACT 162739 || | ||||||||||||| ||| || ||||| || || Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCT 266 >seq532379 Length=15352 Score = 111 bits (122), Expect = 2e-19 Identities = 129/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 162147 GACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 162206 ||||||||||||||||| || |||||||| || | || ||||| ||||||| | ||| Sbjct 14388 GACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 14447 Query 162207 CTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCG 162266 | ||| ||||| |||| ||||| ||||| || || ||||||||| || || | || Sbjct 14448 TTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCA-TGATTGGCT 14506 Query 162267 AGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGC 162319 ||||||||| | || || || ||| | || || | ||||||||| || || Sbjct 14507 AGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGC 14559 >seq542539 Length=11310 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 161725 TTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGAC 161784 ||||| ||||| || ||| | ||||||||| | ||| |||| | || ||||| || Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 161785 GTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTC 161844 | ||||||||||| ||||| ||||||| ||||| | || ||||||||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 161845 CCTCTTGACCTTGCTGCTGCTGA 161867 ||||| ||| | |||| || ||| Sbjct 6973 CCTCTAGACTTAGCTGATGTTGA 6951 >seq216476 Length=3150 Score = 100 bits (110), Expect = 3e-16 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 162439 TTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTATTCGTCCTTACA 162498 || ||||||||||| | ||||| ||||||| | ||| ||| | || | ||| | Sbjct 3006 TTCTAGGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGTTGCGACTTTATA 2947 Query 162499 ATGCTATTGCTTTCTCAGGTCCTATTGCTG-TATTCGTTAGTGTTTTTCTTATCTATCCT 162557 |||| || | ||||| ||||| |||| || | || ||| || || ||| | ||||| Sbjct 2946 ATGCAATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCA 2887 Query 162558 TTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTC 162617 |||| ||||| |||||||| | ||| || || || ||||| || || ||||| Sbjct 2886 CTGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTC 2827 Query 162618 CTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTA 162677 | || || || | ||| || ||||| |||| | | || || ||||| |||||||| || Sbjct 2826 ATCCT-TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTT 2768 Query 162678 GC 162679 || Sbjct 2767 GC 2766 >seq40677 Length=4500 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 161203 TACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTA 161262 || ||||||||||||||||||||| || || |||||| ||||||||||||||| || Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGATTGCTGTT 95 Query 161263 GCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAA 161322 ||||| || ||| ||| || || || | || ||| ||| || | || ||| | || ||| Sbjct 94 GCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGGCCAA 35 Query 161323 GGTTCTTTCTCTGATGCAATGCCTCTGGGCATCT 161356 || | ||||||| || ||| | || |||| Sbjct 34 GGAAGCTCTTCTGATGGTATACCTTTAGGAATCT 1 >seq680530 Length=586 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 161089 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 161148 || ||||| ||||||| ||||| || |||||||| ||| | || || ||| | ||| Sbjct 50 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATTTGCTGATGAGTGGTTATAC 109 Query 161149 AACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATG 161208 || |||||||||| | || |||| | ||||| | |||| | | ||| ||| Sbjct 110 AATGGTGGTCCTTATGAGCTAATTGTTCTAAACTTCTTACTTGGTGTAGCTTGTTATATG 169 Query 161209 GGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGC 161245 |||||||||||||||||| || ||||||||| |||| Sbjct 170 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGCATGC 206 >seq466961 Length=778 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 162993 GAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGA 163052 ||||| ||||| |||||||| ||||| || || || |||||| | || || || |||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 163053 GCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTG 163112 || ||| | ||| | ||| || |||||||| || || | |||||||||||||| | Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 163113 CCAAGAGGCAACGCTCT 163129 ||| | || |||||||| Sbjct 657 CCACGTGGAAACGCTCT 641 >seq550293 Length=8024 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 162429 GCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC-GACTTATCGGTAT 162487 || ||||||| |||||||||||| | | | |||||||| || | | || || | | Sbjct 7585 GCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT-T 7527 Query 162488 TCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCT 162547 || |||| ||||| || | ||||| |||| |||||| | || ||| | | || | Sbjct 7526 ACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTAT-TTTGTTTATCTATTCTT 7468 Query 162548 TATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAAT 162607 ||| ||||| | || ||||| |||||||| ||| || ||| | | ||| | || Sbjct 7467 TATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGAT 7408 Query 162608 CTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACAT 162667 || ||||| | | ||| ||||| | || ||||| |||| | | || || ||||| || Sbjct 7407 ATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATAT 7348 Query 162668 GATGGGCGT 162676 |||||| || Sbjct 7347 GATGGGAGT 7339 >seq1484923 Length=1633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 162823 ACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCT 162882 ||||||| ||||| || || || ||| |||||||| || || |||||||| ||||||| Sbjct 1541 ACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCT 1600 Query 162883 TTATGCTCTTTGTTCCCGTCATGGGTCTCTGGA 162915 ||||||| ||||| ||||||| ||| | |||| Sbjct 1601 TTATGCTATTTGTACCCGTCACCGGTTTATGGA 1633 >seq337787 Length=336 Score = 86.0 bits (94), Expect = 7e-12 Identities = 170/249 (68%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926 ||||| || || || |||||| | || ||||| || || || ||||| | || || ||| Sbjct 88 TGGGATCACTTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGATTC 147 Query 160927 GGCGTCCTGATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGT 160985 || || |||||| || ||| | |||| ||| | ||| || || || ||||| | Sbjct 148 GGTGTTTTGATGACCCCTACCTTATTGACTGCAACC-TATGTATTTATTATCTCCTTCAT 206 Query 160986 TGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTA 161045 ||| || || | || || || || |||||||| | || || |||| | | || Sbjct 207 CACTGCCCCTCCACTAGATATTGATGGTATTCGTGAGCATGTT-CTTGTTCTTTACTTTA 265 Query 161046 TGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTT 161105 ||||||||| || |||||||| ||||||| ||||| | | ||| ||||||| Sbjct 266 TGGAAACAATATTNNNNCTGGTGCTATTATCCCCACTTCTGCGGTGAACGGATTGCACTT 325 Query 161106 CTACCCCAT 161114 ||||| || Sbjct 326 TTACCCAAT 334 >seq207681 Length=5110 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 162129 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 162188 || |||||| | ||| ||||||||||||||||| || |||||||| || | | ||| Sbjct 4653 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCCCTTT 4594 Query 162189 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGT 162238 || ||||||| | ||| | ||||||||| |||| ||||| ||||| || Sbjct 4593 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGT 4544 >seq1291308 Length=424 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 161653 GCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 161712 ||||||||| |||| || || ||| |||||||| | | || | || |||| ||| Sbjct 321 GCTGCTTGGTCTGTAGTAGGAATCAGGTTCACTATTTTAGTATTA-GTACTATGGTTTTC 263 Query 161713 AACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAAC 161772 ||||| ||||||||||| || ||||| ||| | ||| ||||||| ||| |||| || Sbjct 262 AACCTAAATGGTTTCAATTTTAACCAATCTGTAGTTAATAGTCAAGGTCGCATTATTAAT 203 Query 161773 ACCTGGGCAGACGTTCTCAACCGTGCT 161799 || || | || | ||||||||||| Sbjct 202 ACTTGATCTGATATCATCAACCGTGCT 176 >seq407668 Length=643 Score = 82.4 bits (90), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 161646 CTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCAT 161705 |||| | | ||||||| |||| || || |||||||||||| | | | || | || || Sbjct 501 CTTCTTGGTTGCTTGGTCTGTAGTAGGAATCTGGTTCACTACTTTAGTATTA-GTACTAT 443 Query 161706 GGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGT 161760 | |||||||| ||||||||||| |||||||| ||| | ||| ||||||| ||| Sbjct 442 GCTTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTAATAGTCAAGGT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536917505244120