Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq68655 140 1e-28 seq539347 114 4e-21 seq214663 96.9 1e-15 seq398894 89.7 2e-13 seq542539 87.8 5e-13 seq40677 84.2 6e-12 >seq68655 Length=5599 Score = 140 bits (154), Expect = 1e-28 Identities = 175/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 18243 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCG 18302 || |||||||| || || | ||| | ||| ||||| |||||||||||||| ||||| || Sbjct 963 CCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 904 Query 18303 GCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAG 18362 || |||||||| | ||| | ||||||||||| || || | ||||||||||||| | Sbjct 903 GCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAAAA 844 Query 18363 AAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGC 18421 || || ||| |||| ||| |||| | ||||| || | | |||||| || | || Sbjct 843 AAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTA-GTAGCTGCAACATGAGC 785 Query 18422 GGAATAAGCAACACAAATCCACGGGCGCATACCTA-GTCTATAACTAAGTTCCCA 18475 ||||| |||||| |||||| || |||||||| | || | || |||||||||| Sbjct 784 TGAATATGCAACATCAATCCAAGGACGCATACCCATGTGGA-AATTAAGTTCCCA 731 >seq539347 Length=3493 Score = 114 bits (126), Expect = 4e-21 Identities = 112/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || |||||||||| ||||| || |||||||| | || ||||| | ||| ||||| Sbjct 142 CCATGCATAGCAGTGAATAGGAAACCGCCGAATACACA-GCTACACCTAACATGTGGAAT 84 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 |||||||||||||| ||||| || || |||||||| | ||| || ||||||||||| Sbjct 83 GGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 24 Query 18339 ATACCAAGAGGCATACCATCAGA 18361 || || | ||||||||||||||| Sbjct 23 ATTCCTAAAGGCATACCATCAGA 1 >seq214663 Length=1678 Score = 96.9 bits (106), Expect = 1e-15 Identities = 184/271 (68%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG-----ATTGGGTAGAAGTGAAGACCG 18599 |||| ||||||| || | | |||||||||||| |||||||| ||||| | | | Sbjct 1635 ATATTACCACTCATCAACAGATGCAGCTTCCCATCCCAAATTGGGTACAAGTGCAATCTG 1576 Query 18600 ATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCT 18659 || || ||| | |||| || | || || | || ||||||| || ||||| | Sbjct 1575 ATCGCCGCAGAAGTAGGGATAATAACACCAGAGGTAATATTGTTTCTGTAAAGTAAAGAA 1516 Query 18660 CCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATC 18719 || || ||| |||||||||||||||| || || || || | || || | || || || Sbjct 1515 CCAGAAACAAGCTCACGAATACCATCAATATCTACTAGAAGGGCGGCGATGAAGGCGATA 1456 Query 18720 AAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACG 18779 | |||| | | || || || || | | ||||||||| | || | |||||| || | | Sbjct 1455 ATAAATACAGAAGTTGTCGTCAATAAGGTAGGGATCATCAAAACACGAAACCATCCGATG 1396 Query 18780 TAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 || || || |||| | || || | ||||| Sbjct 1395 TATAGACGATTGTCACTGCTAGTTATCCAGT 1365 >seq398894 Length=318 Score = 89.7 bits (98), Expect = 2e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 18639 TTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGA 18698 ||||||||||| ||||| | || || |||||||||||||||||||| || || || ||| Sbjct 318 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 259 Query 18699 GGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATA 18758 || ||||| | || || || | |||| | | || || | || | | ||||||||| Sbjct 258 GGGGCAGCGATGAAGGCGATAATAAATACGGAAGTTGTACTCAATAAGGTAGGGATCATC 199 Query 18759 AGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 | || || ||||| || | ||| || | || | || || || | ||||| Sbjct 198 AAAACACCGAACCATCCGATGTAAAGATGATTTTCAGTGCTAGTTATCCAGT 147 >seq542539 Length=11310 Score = 87.8 bits (96), Expect = 5e-13 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| |||||||| ||||||||||| | ||||||||||| | |||||||| Sbjct 6959 AGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTTATGCATAACTTCCACACCAAGGTT 7018 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTA 17921 ||| | ||||| | |||||||| ||| Sbjct 7019 AGCACGGTTGATGATATCAGCCCAAGTA 7046 >seq40677 Length=4500 Score = 84.2 bits (92), Expect = 6e-12 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATAC 18397 || || | ||| ||||||||||| | || ||||| |||| ||| |||| | ||||| || Sbjct 3 ATTCCTAAAGGTATACCATCAGAAGAGCTTCCTTGGCCAATAGGGTAAATCAAGAAA-AC 61 Query 18398 T-GAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTA 18456 | || | |||||||| || | | ||||| |||||| |||||| || |||||||| | Sbjct 62 TACAGTA-GCAGCTGCAACATGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCA 120 Query 18457 GTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 | ||||||||||||| | || ||||| || Sbjct 121 GATGGAAACTAAGTTCCCACTCACGACCCATATA 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148476221201458