Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq507140 138 1e-27 seq68655 138 1e-27 seq216476 113 6e-20 seq550293 107 2e-18 seq466961 95.1 2e-14 seq428484 89.7 6e-13 seq40677 89.7 6e-13 seq214663 87.8 2e-12 seq680530 82.4 9e-11 >seq507140 Length=321 Score = 138 bits (152), Expect = 1e-27 Identities = 177/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 102069 GAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGAT 102128 ||| || ||||| |||||| || ||| | |||||||| || || || | || || || Sbjct 297 GAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCTACGGTCGCTCCATGAAT 238 Query 102129 TGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAG 102188 || | ||||| || | || | | | ||||| ||||||||||| |||||||| | Sbjct 237 AGCGCATAGCAGAGCCGCACCTAATACTCGGGCAACTCCCATCATATGAAATGGGTTCAA 178 Query 102189 CGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248 |||||| ||||| || || || | ||| || | ||||| |||||||| ||| || ||||| Sbjct 177 CGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATCGTTGCTACGCCAAA 118 Query 102249 CGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAA 102308 |||||||||||||||| || || | || ||||| || || || ||| ||||| Sbjct 117 ACTCGGCGCAAAGAACCAACCAGATTGCACCAGTGGATAAATAAGGAATACAGAAACAAA 58 Query 102309 AACA 102312 |||| Sbjct 57 AACA 54 >seq68655 Length=5599 Score = 138 bits (152), Expect = 1e-27 Identities = 184/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 103569 CACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGA 103628 ||||||| || ||||| ||||| || ||||| | || | ||||||||| || ||||| | Sbjct 977 CACTGAATAGGGAACCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAA 918 Query 103629 GAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAG 103688 | ||||| || || || ||||| || | ||| |||||| || || || || || |||| Sbjct 917 GGATGTTGTGCTCTGCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAG 858 Query 103689 GCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAG 103748 ||||| |||| | || ||| ||||| ||||| | |||||| | || | | || Sbjct 857 GCATACCATCAAAAAAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAG 798 Query 103749 CCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACA 103808 | |||||| |||| || ||||| ||| ||||| || ||||| |||| || | | Sbjct 797 CTGCAACATGAGCTGAATATGCAACATCAATCCAAGGACGCATACCCATGTGGAAATTAA 738 Query 103809 ATTCCCACTCACGTCC 103824 |||||||||||| || Sbjct 737 GTTCCCACTCACGACC 722 >seq216476 Length=3150 Score = 113 bits (124), Expect = 6e-20 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 102160 GCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGT 102219 ||||| ||||||||||| |||||||| | | |||| ||||| || || | || || || Sbjct 2766 GCAACTCCCATCATATGAAATGGGTTCAACATCCAATTATGAAATCCTAGAAGAAA-AGG 2824 Query 102220 AGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCG 102279 | ||||| ||| |||||||| |||||||| ||| |||||||||||| || || || Sbjct 2825 ATGAATCAAAACATCGCTGCTACACCAAAACTCGGCACAAAGAACCAACCAGATTGCCCC 2884 Query 102280 AGAGGATAGATGAGAAACACACTGAC-AAAAACAGCGATAGGCCCAGAGAACGCAATAGC 102338 || ||||| | || || || || ||||||| | || || |||||||| | || || Sbjct 2885 AGTGGATAAAGAAGGAATACGGAAACAAAAAACAACAATTGGACCAGAGAATGGGATTGC 2944 Query 102339 ATTGTA 102344 ||| || Sbjct 2945 ATTATA 2950 >seq550293 Length=8024 Score = 107 bits (118), Expect = 2e-18 Identities = 175/251 (70%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 102161 CAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTA 102220 |||| ||||||||||| |||||||| | | |||| ||||| || | || | ||| | | Sbjct 7337 CAACTCCCATCATATGAAATGGGTTCAACCTCCAATTATGTAAACATTGGAAGAAAATGA 7396 Query 102221 GGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGA 102280 |||||||||||||| ||| | | || | ||||||||||||| || || |||| Sbjct 7397 TGAATCTAAATATCGTTGCTATGCTGAAACTCGATGCAAAGAACCAACCAGATTGCCCGA 7456 Query 102281 GAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCAT 102340 | ||||| || | || | | | | |||| ||| || || | |||||||| || |||| Sbjct 7457 GTGGATAAATAAAGAATAGA-TAAACAAAATAGCAATTGGACTAGAGAACGAGATTGCAT 7515 Query 102341 TGTACGGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGA 102400 | || | || | | || ||| ||| | || |||| | | | ||||||||| || Sbjct 7516 TATAAGATCGTAATTGAACAGACCGAGCAAGTTCAAATTAATGTAACATGAAACCTATTG 7575 Query 102401 GGGCAAATGCA 102411 | ||||| ||| Sbjct 7576 GTGCAAAAGCA 7586 >seq466961 Length=778 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||||||||| |||| || |||||||| || ||||| Sbjct 641 AGAGCGTTTCCACGTGGTAGAACCTCTTCAGGGAATATAAGATTTTCATGAGGCTGATCC 700 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||||| ||| ||||| | ||| || || || || || || || || ||||| ||| Sbjct 701 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTNTAGAAAGTC 760 Query 101830 TCGAACTCTGGATCTTC 101846 || || || |||||||| Sbjct 761 TCAAATTCAGGATCTTC 777 >seq428484 Length=423 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 101953 ATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAGAAA 102012 ||||| | ||| ||||| | ||||| ||| |||| |||||||||||| ||||| || Sbjct 343 ATAAA-AGATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAAAAG 285 Query 102013 CGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGT 102053 ||||| || || |||||||||||||| ||||| ||||| || Sbjct 284 CGGTTAGCAGTGACCATTGAATAAGTTTCTTCATCTTGAGT 244 >seq40677 Length=4500 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 103679 ATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACT 103738 || || ||||| ||| |||| || | ||||| |||| ||||| | |||||| ||| Sbjct 3 ATTCCTAAAGGTATACCATCAGAAGAGCTTCCTTGGCCAATAGGGTAAATCAAGAAAACT 62 Query 103739 GCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGA 103798 | | ||||| |||||| ||| || ||||| ||| ||||| || ||||| |||||| Sbjct 63 ACAGTAGCAGCTGCAACATGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCAGA 122 Query 103799 CGGTAGGACAATTCCCACTCACGTCCCATATA 103830 || | | |||||||||||| |||||||| Sbjct 123 TGGAAACTAAGTTCCCACTCACGACCCATATA 154 >seq214663 Length=1678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 172/249 (69%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 103891 CCACTCATCAAGAGATGCTGCT-----TCCCAAATGGGATAGAAGTGAAGACCAATTG-C 103944 ||||||||||| |||||| ||| |||||||| || || ||||| | | || | | Sbjct 1629 CCACTCATCAACAGATGCAGCTTCCCATCCCAAATTGGGTACAAGTGCAATCTGATCGCC 1570 Query 103945 GTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGC 104004 | | || |||| | || |||||||| | || ||||| | ||| | | ||||||| Sbjct 1569 GCAGAAGTAGGG-ATAATAACACCAGAGGTAATATTGTTTCTGTAAAGTAAAGAACCAGA 1511 Query 104005 GACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA 104064 || | |||||||| || || ||||| || || | || || | ||| || | || || Sbjct 1510 AACAAGCTCACGAATACCATCAATATCTACTAGAAGGGCGGCGATGAAGGCGATAATAAA 1451 Query 104065 -GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGA 104123 |||| |||| || ||| | || |||||||||| |||| ||||| || | || | Sbjct 1450 TACAGA-AGTTGTCGTCAATAAGGTAGGGATCATCAAAACACGAAACCATCCGATGTATA 1392 Query 104124 GACGGTTGT 104132 |||| |||| Sbjct 1391 GACGATTGT 1383 >seq680530 Length=586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 103788 GCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGA 103847 |||||||||||||| | | |||||||||||| |||||||| | | |||| | Sbjct 206 GCATGCCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTA 147 Query 103848 GGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATG 103907 ||||| | || | || | |||||||||| || || | |||||||||| | ||| Sbjct 146 AGAAGTTTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAGCAAATG 87 Query 103908 CTGCTTCCCAAATGGGATAGAAGTG 103932 | ||||||||||| || || ||||| Sbjct 86 CAGCTTCCCAAATTGGGTAAAAGTG 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620988188803560