Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq68655 129 2e-25 seq539347 105 2e-18 seq533011 104 7e-18 seq1397474 89.7 1e-13 >seq68655 Length=5599 Score = 129 bits (142), Expect = 2e-25 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || || ||||| || || | ||| | |||||| || ||||||||||| || |||||||| Sbjct 963 CCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 904 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAA 21998 |||||||| || | ||| |||||| || || || || || || |||||| ||||| || Sbjct 903 GCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAAAA 844 Query 21999 AAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCA 22058 || | | |||| || |||| | ||| | |||||| | ||| || ||| |||| Sbjct 843 AAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAGCTGCAACATGAGCT 784 Query 22059 GAGTACGCAACAAAGATCCAGGGCCTCATCCCTA-GTCGATAGCTAAGTTCCCACTCTCG 22117 || || |||||| ||||| || | ||| || | || || | ||||||||||||| || Sbjct 783 GAATATGCAACATCAATCCAAGGACGCATACCCATGTGGAAAT-TAAGTTCCCACTCACG 725 Query 22118 TCC 22120 || Sbjct 724 ACC 722 >seq539347 Length=3493 Score = 105 bits (116), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACA 21899 || || |||| | ||| |||||||||| ||| | || || ||||| | | | ||| Sbjct 157 GAGGTTACCAAGGAACCATGCATAGCAGTGAATAGGAAACCGCCGAATACACAG-CTACA 99 Query 21900 CCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAG 21959 || | |||||| || ||||||||||| || |||||||| |||||||| || | ||| || Sbjct 98 CCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAG 39 Query 21960 TTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGA 21997 ||||| || || || || || || |||||| ||||||| Sbjct 38 TTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGA 1 >seq533011 Length=4556 Score = 104 bits (114), Expect = 7e-18 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 21703 TATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATAT 21762 |||| || |||||||||||||| |||| || |||||||| | || | ||| ||||||| Sbjct 2077 TATTCAAACTAGCATATTGGAATATAAATCGGCCAAAATAACTATGGGAAGCCACAATAT 2136 Query 21763 TGTAAGTCTCTTCCTCTTGACCAAACTTGTAA 21794 | ||||||||||||||||||||||| |||||| Sbjct 2137 TATAAGTCTCTTCCTCTTGACCAAATTTGTAA 2168 >seq1397474 Length=866 Score = 89.7 bits (98), Expect = 1e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 21735 CCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAA 21794 |||||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||| Sbjct 783 CCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAA 842 Query 21795 CC 21796 || Sbjct 843 CC 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143461808672460