Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq68655 140 4e-28 seq539347 134 2e-26 seq466961 93.3 5e-14 seq544533 89.7 6e-13 seq680530 86.0 7e-12 >seq68655 Length=5599 Score = 140 bits (154), Expect = 4e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 124447 GAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAAT 124506 ||||| || || ||||| | || |||| ||| ||||||||| |||||||| || || Sbjct 973 GAATAGGGAACCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAAGGAT 914 Query 124507 GTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCAT 124566 ||| |||||||| ||||| || | ||||| |||||||||||| ||||| || | ||||| Sbjct 913 GTTGTGCTCTGCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAGGCAT 854 Query 124567 ACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGA 124626 ||||||| | || | | ||||| ||||| | ||||| | ||| | ||| | Sbjct 853 ACCATCAAAAAAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAGCTGC 794 Query 124627 TACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCC 124668 || | |||||||| |||||| |||||||||||||| || Sbjct 793 AACATGAGCTGAATATGCAACATCAATCCAAGGACGCATACC 752 >seq539347 Length=3493 Score = 134 bits (148), Expect = 2e-26 Identities = 135/174 (78%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 124402 TTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCC 124461 ||| ||||| | | ||| || || | ||||||||||| || | ||||| | || || Sbjct 173 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCAGTGAATAGGAAACCGCC 114 Query 124462 GAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTG 124521 ||| | | ||||| ||| ||||||||| |||||||| || ||||| |||||||| || Sbjct 113 GAATACACA-GCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTG 55 Query 124522 GAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGA 124575 ||| || | |||||||||||||||||| ||||| || | |||||||||||||| Sbjct 54 GAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGA 1 >seq466961 Length=778 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || ||||| ||||||| || ||| ||||| || || Sbjct 637 TTAAAGAGCGTTTCCACGTGGTAGAACCTCTTCAGGGAATATAAGATTTTCATGAGGCTG 696 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || || || || | |||||| || || || ||||| Sbjct 697 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTNTAGAA 756 Query 122986 AGTCTCGAACTCTGGGTCTTC 123006 |||||| || || || ||||| Sbjct 757 AGTCTCAAATTCAGGATCTTC 777 >seq544533 Length=12290 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | ||||||||| || || ||||||||||| || |||||||| || Sbjct 5393 ACACCAATAGGACCCATGCCAGGACCACCTCCACCATGTGGAATGCAAAATGTCTTGTGA 5452 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || ||||| || |||||||| ||| Sbjct 5453 AGGTTAAGATGGCAAACATCTGCTCCA 5479 >seq680530 Length=586 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 124682 AGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAAC 124741 |||||||||| | ||||| || | | ||||| | ||||| | || | | | Sbjct 186 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTTTAGAACAATTAGC 127 Query 124742 TGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAG 124801 | ||||||||||||||| || ||||| |||||| || ||| |||||||| |||||||| Sbjct 126 TCATAAGGACCACCATTGTATAACCACTCATCAGCAAATGCAGCTTCCCAAATTGGGTAA 67 Query 124802 AAGTGTAGTCCGATAGC 124818 ||||| | |||||| || Sbjct 66 AAGTGCAATCCGATCGC 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567550827221640