Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq68655 165 1e-35 seq507140 150 2e-31 seq216476 150 2e-31 seq539347 141 1e-28 seq550293 129 8e-25 seq37697 118 1e-21 seq214663 104 3e-17 seq532379 93.3 6e-14 seq398894 93.3 6e-14 seq1492040 82.4 1e-10 >seq68655 Length=5599 Score = 165 bits (182), Expect = 1e-35 Identities = 190/253 (75%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 27132 GAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGAT 27191 ||| || || || |||||||| ||||| | ||| | ||||||||| || ||||||||||| Sbjct 973 GAATAGGGAACCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAAGGAT 914 Query 27192 ATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCAT 27251 ||||| |||||||||||||||| ||| ||| |||||||||||||| || | |||||| Sbjct 913 GTTGTGCTCTGCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAGGCAT 854 Query 27252 AGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGC 27311 | |||| | || ||| ||| | ||| || | | ||| | ||| | | ||| || Sbjct 853 ACCATCAAAAAAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAGCTGC 794 Query 27312 GACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTA-AACGATATGAGAGTT 27370 || |||| |||||||| ||| ||||| ||||||||||| | || || | |||| Sbjct 793 AACATGAGCTGAATATGCAACATCAATCCAAGGACGCATACCCATGTGGAAATTA-AGTT 735 Query 27371 CCCACTCACGTCC 27383 |||||||||| || Sbjct 734 CCCACTCACGACC 722 >seq507140 Length=321 Score = 150 bits (166), Expect = 2e-31 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 23777 ATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTAT 23836 ||| ||||| |||| || || ||||||||||||| | || || || | || | || Sbjct 268 ATAGAGTGTTTTCT--ACGGTCGCTCCATGAATAGCGCATAGCAGAGCCGCACCTAATAC 211 Query 23837 ACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAA 23896 | ||||||||||||||||| || ||||| | |||||| |||||||| || |||| ||| Sbjct 210 TCGGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAA 151 Query 23897 GAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTG 23956 || | ||| | || |||| || || || ||||||||||||||||||||| || || Sbjct 150 AAGGATGAATCGAAATATCGTTGCTACGCCAAAACTCGGCGCAAAGAACCAACCAGATTG 91 Query 23957 TCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAAT 23998 ||| ||||| || ||||||||||| || || ||| |||| Sbjct 90 CACCAGTGGATAAATAAGGAATACAGAAACAAAAACAACAAT 49 >seq216476 Length=3150 Score = 150 bits (166), Expect = 2e-31 Identities = 207/284 (73%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 23800 CTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGA 23859 |||||||||||| | | || || | || | ||| ||||||||||||||||| | Sbjct 2725 CTCCATGAATAGTGCATCGTAGAGCCACGCCTAATATTTTGGCAACTCCCATCATATGAA 2784 Query 23860 AGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCG 23919 | ||||| | | |||| |||||||| || | || ||| || | ||| | || ||||| | Sbjct 2785 ATGGGTTCAACATCCAATTATGAAATCC-TAGAAGAAAAGGATGAATCAAAACATCGCTG 2843 Query 23920 CAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATA 23979 | ||||| ||||||||| ||||||||||| || || |||| ||||| | ||||||| Sbjct 2844 CTACACCAAAACTCGGCACAAAGAACCAACCAGATTGCCCCAGTGGATAAAGAAGGAATA 2903 Query 23980 CAGACAC-GAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCA 24038 | || || || ||| |||| |||||||| || | || ||||| || | || | | | Sbjct 2904 CGGAAACAAAAAACAACAATTGGACCAGAGAATGGGATTGCATTATAAAGTCGCA-ACTA 2962 Query 24039 ATTAGA-CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAA 24081 | |||| || | ||||||| || |||||||| ||||||| || Sbjct 2963 AATAGATCGATCATGTTCAAATTGGCGTAACATGAAACCTAGAA 3006 >seq539347 Length=3493 Score = 141 bits (156), Expect = 1e-28 Identities = 118/143 (83%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 27118 CCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 27177 || |||||||||| ||| || | || |||||||| | ||| ||||| | ||||||||| Sbjct 142 CCATGCATAGCAGTGAATAGGAAACCGCCGAATACAC-AGCTACACCTAACATGTGGAAT 84 Query 27178 GGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAG 27237 || ||||||||||| ||||| |||||||||||||||| ||| |||| |||||||||||| Sbjct 83 GGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 24 Query 27238 ATACCAAGAGGCATAGCATCGGA 27260 || || | ||||||| |||| || Sbjct 23 ATTCCTAAAGGCATACCATCAGA 1 >seq550293 Length=8024 Score = 129 bits (142), Expect = 8e-25 Identities = 182/252 (72%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 23842 CAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAA 23901 |||||||||||||||| || ||||| | | |||| ||||| || | |||| ||| | | Sbjct 7337 CAACTCCCATCATATGAAATGGGTTCAACCTCCAATTATGTAAACATTGGAAGAAAATGA 7396 Query 23902 GGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCA 23961 ||| || || |||| || | | |||||||| |||||||||||| || || || | Sbjct 7397 TGAATCTAAATATCGTTGCTATGCTGAAACTCGATGCAAAGAACCAACCAGATTGCCCGA 7456 Query 23962 AAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCAT 24021 ||||| || | ||||| | | || || | |||||| |||| ||| || | || |||| Sbjct 7457 GTGGATAAATAAAGAATAGATAAAC-AAAATAGCAATTGGACTAGAGAACGAGATTGCAT 7515 Query 24022 TGTAGGGACGGATTCCAATTAGA-CGTGCCAGTTCAAACTGACGTAACATAAAACCTATA 24080 | || | || | | || ||| || || |||||||| | | ||||||| |||||||| Sbjct 7516 TATAAGATCGTAATTGAA-CAGACCGAGCAAGTTCAAATTAATGTAACATGAAACCTATT 7574 Query 24081 AGTGCAAAGGCA 24092 ||||||| ||| Sbjct 7575 GGTGCAAAAGCA 7586 >seq37697 Length=321 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 23796 GTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATA 23855 || ||||||||||||| | | || || | || | ||| ||||||||| ||||| Sbjct 231 GTCACTCCATGAATAGTGCATCGTAGAGCCACGCCTAATATTTAGGCAACTCCCGTCATA 172 Query 23856 TGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATC 23915 || || ||||| | | |||| || ||||| ||| || ||| || | ||| | || ||| Sbjct 171 TGAAATGGGTTCAACATCCAATTTTGAAA-TCCTAGAAGAAAAGGATGAAACAAAATATC 113 Query 23916 GCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGG 23975 || || | ||| ||||||||| |||||||||| || || |||| ||||| || ||| Sbjct 112 GCAGCTATACCAAAACTCGGCACAAAGAACCAGCCAGATTGCCCCAGTGGATAAATAAGG 53 Query 23976 AATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTA 24025 ||||| | || || ||| |||| | |||||| || | || ||||| || Sbjct 52 AATACGAAAACAAAAACAACAATTGAACCAGAGAATGGGATTGCATTATA 3 >seq214663 Length=1678 Score = 104 bits (114), Expect = 3e-17 Identities = 174/249 (70%), Gaps = 7/249 (3%) Strand=Plus/Minus Query 27449 ACCACTCATCGAGTGATGCTGCTTCCCAG-----ATTGGGTAGAAGTGGAGACCGATTGC 27503 |||||||||| | ||||| |||||||| |||||||| ||||| | | ||| || Sbjct 1630 ACCACTCATCAACAGATGCAGCTTCCCATCCCAAATTGGGTACAAGTGCAATCTGATCGC 1571 Query 27504 ATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGC 27563 ||| | |||| || ||||||| | || ||||| | || | | ||||||| Sbjct 1570 CGCAGAAGTAGGGATAATAACACCAGAGGTAATATTGTTTCTGTAAAGTAAAGAACCAGA 1511 Query 27564 AACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA 27623 ||| | ||||||||||| |||||||| || | | || |||||||| |||| ||| || Sbjct 1510 AACAAGCTCACGAATACCATCAATATCTACTAGAAGGGCGGCGATGAAGGCGATAATAAA 1451 Query 27624 -GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACA 27682 |||| ||||| | || | || |||||||||| |||| ||||| || | || | Sbjct 1450 TACAGA-AGTTGTCGTCAATAAGGTAGGGATCATCAAAACACGAAACCATCCGATGTATA 1392 Query 27683 AACGGTTGT 27691 ||| |||| Sbjct 1391 GACGATTGT 1383 >seq532379 Length=15352 Score = 93.3 bits (102), Expect = 6e-14 Identities = 127/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 24201 GCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGT 24260 ||||| || || || |||| || | ||| ||| || || | |||||||||||| | | Sbjct 14559 GCAGGGGTAGAAACTACTGCGGTTAAAAAATTACAGCCTTCCAAATAGGAACTAGCCAAT 14500 Query 24261 CCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGA 24320 ||||||| |||||| || ||||||| ||| || |||| ||||| || | || | | Sbjct 14499 -CATGGGTATACCAAAAAGTTACAAAAGTTGTCCCGGTAAACCAACACCCTAAAGCGAAA 14441 Query 24321 TAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCG 24376 |||||| |||| || | || |||||||| || ||||| || || || ||||| Sbjct 14440 TAAGCACAAGGAAAGAGCAATAGGCCAGACCATCCTACAAAAACGAAACGGTCCCG 14385 >seq398894 Length=318 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 27538 TTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGT 27597 ||||| ||||| | | ||||||| ||| || ||||||||||| |||||||| || || Sbjct 318 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 259 Query 27598 GGTGCTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGCT-AACAGTGTTGGGATCAT 27656 || || |||||||| |||| ||| || | ||||| | || || | || |||||||| Sbjct 258 GGGGCAGCGATGAAGGCGATAATAAATACGGAAGTTG-TACTCAATAAGGTAGGGATCAT 200 Query 27657 CAGTACACCGAACCAACC 27674 || ||||||||||| || Sbjct 199 CAAAACACCGAACCATCC 182 >seq1492040 Length=4344 Score = 82.4 bits (90), Expect = 1e-10 Identities = 97/128 (76%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 23858 GAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAAT--C 23915 ||| |||| || |||||| |||||||| || |||| ||| || | ||| ||||||| | Sbjct 1303 GAACGGGT-GAACGTCCAATTATGAAATCCTTGGACGAAAAGGATGAA--TGAAAATATC 1247 Query 23916 GCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGG 23975 || || || | ||||| || |||||||||||| || || ||| ||||| || ||| Sbjct 1246 GCTGCTACGTCAAAACTAGGTGCAAAGAACCAACCAGATTGCTCCAGTGGATAAATAAGG 1187 Query 23976 AATACAGA 23983 |||||||| Sbjct 1186 AATACAGA 1179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652336685613240