Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq542047 114 2e-20 seq1482391 96.9 4e-15 seq4698 91.5 2e-13 seq298898 89.7 6e-13 >seq542047 Length=2783 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||| | | || || || || || ||||| ||||||||||| || || || Sbjct 1588 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTT 1647 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 ||| || || | ||| | ||||||||||| |||||||| ||||| |||||| || || Sbjct 1648 CTGTGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 1707 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 1708 GCTCATCTCCCGCGACGAGGGCCTGCAC 1735 >seq1482391 Length=7374 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||||||||||||||||| |||||| | ||||| |||||||| | | ||| Sbjct 3685 TTCGTGGAGATGTTTGTTGGTGTTGGTGCCTCCCGTGTTCGTGATCTCTTCAAGAAGGCC 3744 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 3745 AAGGAGAATGCTCCTTGCATCGTGTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGA 3804 Query 175515 ----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 ||| | |||||| | || || || || || || || | ||||| ||| Sbjct 3805 GGAACAGGTATCGGTGGT------GGGAACGATGAAAGGGAGCAGACTCTCAATCAGCTA 3858 Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 || || ||||||||||| ||||| | |||||||| | ||| |||| ||||| || Sbjct 3859 CTGACTGAGATGGATGGTTTTGAGGGCAACACTGGCATCATTGTTGTTGCTGCCACCAAC 3918 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 | | || ||| | ||| || | ||| | || || || ||||| Sbjct 3919 AGGGCTGACATCTTGGATTCTGCTTTGCTTAGACCTGGACGCTTTGA 3965 >seq4698 Length=7391 Score = 91.5 bits (100), Expect = 2e-13 Identities = 212/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| ||| ||| |||| || ||| || || || ||||| || Sbjct 6791 GGGGCCAAGATCCCCAAGGGCTGCCTGCTCGTCGGCCCGCCCGGGACCGGGAAGACGCTG 6732 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 |||||| | ||| |||| || || | || || ||| || ||| | || | | Sbjct 6731 CTCGCCAGGGCCGTCGCCGGGGAGGCCGGGGTGCCCTTCTTCTCCTGCGCCGCGTCTGAG 6672 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || || ||||| || ||||| | || ||||| || | ||| Sbjct 6671 TTCGTCGAGCTCTTCGTCGGCGTGGGCGCGTCCAGGGTCAGGGACCTCTTCGAGAAGGCC 6612 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || |||||||| ||||||||||| || || || | ||| || Sbjct 6611 AAGGCCAAGGCGCCCTGCATCGTCTTCATCGATGAGATTGACGCCGTCGGGAGGCAGCGT 6552 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | || || ||| || | || || ||||| || || |||||||| || || |||| Sbjct 6551 GGTGCCGGCATGG-GTG-GGGGGAACGATGAGAGGGAGCAGACAATTAACCAGCTGCTCA 6494 Query 175574 CCGAGATGGATGGCTT 175589 | |||||||| ||||| Sbjct 6493 CAGAGATGGACGGCTT 6478 >seq298898 Length=8579 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 177565 AACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGT 177624 |||| | ||||| ||| |||| | || ||||||||||| ||||||| || || || Sbjct 245 AACTCCTCCACAGTGTGGCACTCCTCGGTGGCGACAACATAGTCATCAGGCTTGTCCTGC 186 Query 177625 TGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCG 177684 || ||||||||||||||||| || ||||| ||| || ||||| || ||||| || Sbjct 185 TGGAGCATGAGCCACATGGCCTCGACATAATCCCCAGCGAAGCCCCAATCCCTGGCGGCC 126 Query 177685 TTGAGGTTACCGAG 177698 |||||| ||||| Sbjct 125 GAGAGGTTGCCGAG 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584774621096160