Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq539347 141 1e-28 seq68655 123 3e-23 seq542539 87.8 2e-12 seq1397474 82.4 9e-11 seq214663 82.4 9e-11 >seq539347 Length=3493 Score = 141 bits (156), Expect = 1e-28 Identities = 136/173 (79%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 8245 TCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCG 8304 || ||||| | | ||| || || || ||||| ||||||||| |||| || | || ||| Sbjct 172 TCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCAGTGAATAGGAAACCGCCG 113 Query 8305 AACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGG 8364 || | || ||||| ||| ||| ||||| ||||||||||| ||||| |||||||| ||| Sbjct 112 AATACACA-GCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGG 54 Query 8365 AATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGA 8417 ||||| | ||| ||||| || |||||||| || |||| |||||| |||||||| Sbjct 53 AATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGA 1 >seq68655 Length=5599 Score = 123 bits (136), Expect = 3e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 8285 CACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAA 8344 ||||||| || || || ||||| | ||| |||| ||| ||| ||||| |||||||||| Sbjct 977 CACTGAATAGGGAACCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAA 918 Query 8345 GAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAG 8404 | ||||| |||||||| |||||||| | ||| | ||| || |||||||| || |||| || Sbjct 917 GGATGTTGTGCTCTGCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAG 858 Query 8405 GCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAG 8464 |||| |||||| | || | | ||||| || || | ||||| | || || || Sbjct 857 GCATACCATCAAAAAAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAG 798 Query 8465 CAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACC 8510 | | || |||| |||||| ||| ||||| || | |||||| Sbjct 797 CTGCAACATGAGCTGAATATGCAACATCAATCCAAGGACGCATACC 752 >seq542539 Length=11310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||||||||| ||||||||||| ||||| | || |||||||||||||| ||| | ||| Sbjct 6960 GCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTTATGCATAACTTCCACACCAAGGTTA 7019 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAAC-ATCAACAACTGA 8009 || | ||| | | ||| |||| ||| ||| || ||| ||||| |||||| || || Sbjct 7020 GCACGGTTGATGATATCAGCCCAAGTATCAATAATGCGACC-TTAACTATCAACTACAGA 7078 Query 8010 TTGGTTAAAGTTAAA 8024 ||| || || || || Sbjct 7079 TTGATTGAAATTGAA 7093 >seq1397474 Length=866 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 8145 GATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACC 8204 ||||| || ||||| || ||||||||||| ||||||||||| |||||||| |||||||| Sbjct 774 GATTA-TCAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACC 832 Query 8205 AAACTTATAACC 8216 ||| || ||||| Sbjct 833 AAATTTGTAACC 844 >seq214663 Length=1678 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/233 (68%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 8606 ACCACTCATCTAATGTGGCAGCTTCCCA-----AATGGGATAGAAGTGTAATCCAATAGC 8660 |||||||||| | | ||||||||||| ||| || || ||||| |||| || || Sbjct 1630 ACCACTCATCAACAGATGCAGCTTCCCATCCCAAATTGGGTACAAGTGCAATCTGATCGC 1571 Query 8661 GTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGC 8720 |||| || | | | |||||||| | || ||||||| || | || ||||| | Sbjct 1570 CGCAGAAGTAGGGATAATAACACCAGAGGTAATATTGTTTCTGTAAAGTAAAGAACCAGA 1511 Query 8721 AACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA 8780 |||| | ||||||||||| || ||||| || | | || || || || || | ||||| Sbjct 1510 AACAAGCTCACGAATACCATCAATATCTACTAGAAGGGCGGCGATGAAGGCGATAATAAA 1451 Query 8781 GCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGA 8833 || || | | || ||| ||| ||||| | ||| | |||||| |||| Sbjct 1450 TACAGAAGTTGTCGTCAATAAGGTAGGGATCATCAAAACACGAAACCATCCGA 1398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603685976636040