Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq68655 134 2e-26 seq216476 122 1e-22 seq507140 114 1e-20 seq550293 100 3e-16 seq37697 96.9 4e-15 seq281357 93.3 5e-14 seq40677 93.3 5e-14 seq1096671 86.0 7e-12 seq988277 84.2 2e-11 seq569282 84.2 2e-11 seq542539 82.4 8e-11 seq398894 82.4 8e-11 >seq68655 Length=5599 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 166102 GGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTAC 166161 ||||||||||||||||| || || | ||||||||||| ||||| |||||| || Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 166162 TCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGT 166221 ||||| | || || ||| | | ||| | ||| | | || ||| | ||| ||| || Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 166222 TTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAA 166281 || | ||||| ||||| | |||||||| || || |||||| ||| | || ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 166282 GCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGT 166341 || |||||||| || || |||||||| ||||| ||| | || | ||||| ||||| || Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 166342 GG 166343 || Sbjct 962 GG 963 >seq216476 Length=3150 Score = 122 bits (134), Expect = 1e-22 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 167341 GGTTTCATGCTTCGACAGTTTGAACTTGCTCGC-CTGATTGGTATCCGTCCCTACAATGC 167399 ||||||||| | || || ||||||| || ||| || || || | || | || ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 167400 TATTGCTTTCTCTGGTCCTATTGCTGTCTTC-GTTAGCGTTTTCCTTCTCTATCCCCTCG 167458 || | ||||||||||| |||| ||| || ||| ||| |||||||| ||||| || | Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 167459 GTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCC 167518 | ||| | |||||||||| ||| || || || || || || || ||||| ||| Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 167519 TCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGC 167576 | ||| || | ||||| || || |||| |||| ||||||||||||||||| || || Sbjct 2822 TTTTCTTCTA-GGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq507140 Length=321 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 167419 ATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTT 167478 |||| ||| || ||| || |||||| | ||||| || | ||| | ||||||||| Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 167479 GCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCAC 167538 || ||| || || || || | || || |||||| |||| ||| |||||||||| || Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 167539 AACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTG 167598 || ||||| |||| ||||||||||||||||| || || | | | |||| || || Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 167599 CTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGA 167651 || | || || ||||| | || ||||| || ||| | | ||| || ||||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 281 >seq550293 Length=8024 Score = 100 bits (110), Expect = 3e-16 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 167326 GCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGC-CTGATTGGTAT 167384 || ||||| | || ||||||||| | | | |||||||||||||| ||| | | | Sbjct 7585 GCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT-T 7527 Query 167385 CCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCT 167444 || | || ||||| || | |||||| |||| |||||| | || ||| | | ||| | Sbjct 7526 ACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATTCTT 7468 Query 167445 TCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCAT 167504 | | ||||| ||||| ||| | ||||||||||| || ||| | | || | || Sbjct 7467 TATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGAT 7408 Query 167505 CTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATAT 167564 || ||||| || | ||| ||||| | || || || |||| |||| ||||||||||| Sbjct 7407 ATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATAT 7348 Query 167565 GATGGGTGT 167573 |||||| || Sbjct 7347 GATGGGAGT 7339 >seq37697 Length=321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 167392 TACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTAT 167451 || ||||| || | ||||||||| | |||| ||| || ||| ||| |||||| | ||| Sbjct 3 TATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTAT 62 Query 167452 CCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGA 167511 || || || ||| |||||||||||| ||| || || | || || || || | Sbjct 63 CCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTGT 122 Query 167512 TTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGT 167571 ||| |||| || || | |||||| || || |||| |||| ||||||||||||| ||| Sbjct 123 TTCATCCT-TTTCTTCTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGGA 181 Query 167572 GTAGC 167576 || || Sbjct 182 GTTGC 186 >seq281357 Length=578 Score = 93.3 bits (102), Expect = 5e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 18120 TCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAG 18179 ||| ||| |||||||||||||||| || ||||| ||| |||||||| || ||||||||| Sbjct 452 TCCGTTC-TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAATTGACTGGTCGTAG 510 Query 18180 GTTCAAATCCTACCTGGGGAG 18200 |||| |||||||| ||||||| Sbjct 511 GTTCGAATCCTACTTGGGGAG 531 >seq40677 Length=4500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 166096 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 166155 || |||||||||||||||||||| || || ||| ||||||||||| ||||| |||| Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGATTGCTGTT 95 Query 166156 GCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAA 166215 || || ||| | | || || ||||| | || ||| ||| | | || ||| | || ||| Sbjct 94 GCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGGCCAA 35 Query 166216 GGTAGTTTCTCTGATGCAATGCCACTCGGAATCT 166249 || || | ||||||| || || | ||||||| Sbjct 34 GGAAGCTCTTCTGATGGTATACCTTTAGGAATCT 1 >seq1096671 Length=312 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAG--CGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAA 18186 |||||| |||||||| ||| ||||| |||| ||||||| |||||||||||||||| || Sbjct 220 TCCTCAATAGCTCAGTTCGGTAGAGCGATCGGCTGTTAACTGATTGGTCGTAGGTTCGAA 279 Query 18187 TCCTACCTGGGGAG 18200 |||||| ||||||| Sbjct 280 TCCTACTTGGGGAG 293 >seq988277 Length=353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 18120 TCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAG 18179 ||| ||| |||||||||||||||| || ||||| ||| ||||||| || |||| |||| Sbjct 233 TCCGTTC-TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTGGTAG 175 Query 18180 GTTCAAATCCTACCTGGGGAG 18200 |||| |||||||| ||||||| Sbjct 174 GTTCGAATCCTACTTGGGGAG 154 >seq569282 Length=3812 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAG--CGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 ||||||| |||||| | ||| ||||| |||| ||||||| |||||||||||||||| | Sbjct 609 TTCCTCAATAGCTCGGTTCGGTAGAGCGATCGGCTGTTAACTGATTGGTCGTAGGTTCGA 550 Query 18186 ATCCTACCTGGGGAG 18200 ||||||| ||||||| Sbjct 549 ATCCTACTTGGGGAG 535 >seq542539 Length=11310 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 166618 TTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGAT 166677 ||||| ||||| || || | ||||| || | ||||| | | | || ||||| ||| Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 166678 GTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTC 166737 | | ||||| ||| || ||| |||||||||||||| | ||||| || ||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 166738 CCCCTCGACCTCGCTGCTGCTGA 166760 || || ||| | |||| || ||| Sbjct 6973 CCTCTAGACTTAGCTGATGTTGA 6951 >seq398894 Length=318 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||||||| | ||| | || ||||| | || | ||| || |||| ||||| ||| | Sbjct 139 CTTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTT 198 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 165887 |||||| || || | ||| ||||| | || || |||||||||||||||| || Sbjct 199 GATGATCCCTACCTTATTGAGTACAACTTCCGTATTTATTATCGCCTTCATCGCTGCCCC 258 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || || || || || ||||| || || |||||||| | | ||||| ||||| Sbjct 259 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550151376370800