Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq68655 129 2e-25 seq539347 105 2e-18 seq533011 104 7e-18 seq1397474 89.7 1e-13 >seq68655 Length=5599 Score = 129 bits (142), Expect = 2e-25 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 41567 GGACGAGAGTGGGAACTTAGCTATCGAC-TAGGGATGAGGCCCTGGATCTTTGTTGCGTA 41625 || || ||||||||||||| | || || | || ||| | || ||||| |||||| || Sbjct 722 GGTCGTGAGTGGGAACTTA-ATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATA 780 Query 41626 CTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTC 41685 || |||| ||| || ||| | |||||| | ||| | |||| || |||| | | Sbjct 781 TTCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAG 840 Query 41686 TTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCA 41745 |||| ||||| |||||| || || || || || || |||||| ||| | || ||||| Sbjct 841 CTTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCA 900 Query 41746 GGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGG 41805 ||| |||||||| || ||||||||||| || |||||| | ||| | || || ||||| || Sbjct 901 GGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGG 960 Query 41806 TGG 41808 || Sbjct 961 CGG 963 >seq539347 Length=3493 Score = 105 bits (116), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 41690 TCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCT 41749 ||||||| |||||| || || || || || || ||||||| ||| | || |||||||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 41750 GAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGG 41809 |||||||| || ||||||||||| || |||||| | ||||| | | | ||||| || || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAG-CTGTGTATTCGGCGGT 119 Query 41810 AGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTC 41847 | ||| |||||||||| ||| | |||| || || Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTC 157 >seq533011 Length=4556 Score = 104 bits (114), Expect = 7e-18 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 |||||| ||||||||||||||||||||||| |||||||| ||| | || | |||||||| Sbjct 2168 TTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTTCCCATAGTTATTTTGG 2109 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATA 41984 || |||| |||||||||||||| || |||| Sbjct 2108 CCGATTTATATTCCAATATGCTAGTTTGAATA 2077 >seq1397474 Length=866 Score = 89.7 bits (98), Expect = 1e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 |||||||| ||||||||||||||||||||||| |||||||| |||||||| || |||||| Sbjct 844 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 785 Query 41951 GG 41952 || Sbjct 784 GG 783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143468088462728