Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq398894 113 1e-20 seq68655 113 1e-20 seq539347 107 5e-19 seq533011 86.0 2e-12 >seq398894 Length=318 Score = 113 bits (124), Expect = 1e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | ||| ||| | || | |||||| | || ||||| Sbjct 131 TGGGGTCGCTTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTC 190 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGC-TGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | | | || || |||||| |||| ||||| Sbjct 191 GGTGTTTTGATGAT-CCCTACCTTATTGAGTACAACTTCCGTATTTATTATCGCCTTCAT 249 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||| | || || Sbjct 250 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTA 309 Query 42459 TGGCAACAA 42467 ||| ||||| Sbjct 310 TGGAAACAA 318 >seq68655 Length=5599 Score = 113 bits (124), Expect = 1e-20 Identities = 174/246 (71%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 42622 GGACGCGAATGGGAACTTTCGTACCGACTTGGG-ATGAGGCCCTGGATCTTTGTTGCTTA 42680 || || || ||||||||| | || || |||| ||| | || ||||| |||||| || Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCC-ACATGGGTATGCGTCCTTGGATTGATGTTGCATA 780 Query 42681 CTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTC 42740 || || | ||| || || | ||||| | ||| | | || || |||| ||| Sbjct 781 TTCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAG 840 Query 42741 TTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCA 42800 |||| ||||| |||||| | || || || ||||| |||||| | ||| | || ||||| Sbjct 841 CTTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCA 900 Query 42801 GGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGG 42860 ||| || || ||||| ||||||||||| ||||| ||| | ||| | || || ||||| || Sbjct 901 GGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGG 960 Query 42861 TGGGTC 42866 || || Sbjct 961 CGGTTC 966 >seq539347 Length=3493 Score = 107 bits (118), Expect = 5e-19 Identities = 111/144 (77%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 42745 TCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCT 42804 || ||||| |||||| | || || || ||||| |||||||| ||| | || |||||||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 42805 GAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGG 42864 || || ||||| ||||||||||| ||||| ||| | ||||| | | | ||||| || || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAG-CTGTGTATTCGGCGGT 119 Query 42865 TCGTTGTTCTCAGCTATGCATGGT 42888 | | ||| | |||||||||||| Sbjct 120 TTCCTATTCACTGCTATGCATGGT 143 >seq533011 Length=4556 Score = 86.0 bits (94), Expect = 2e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 42949 TACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGA 43008 ||||| || ||||||||||| ||||||||||| ||||| || | ||| |||| ||||| Sbjct 2167 TACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTTCCCATAGTTATTTTGGC 2108 Query 43009 CGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTT 43061 || |||| ||||||||||| | |||| |||| | ||||| |||||||| Sbjct 2107 CGATTTATATTCCAATATGC-TAGTTTGAATAGCTCTGATTCTTTACACTTCTT 2055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140836856340436