Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq68655 122 3e-23 seq539347 116 1e-21 seq398894 91.5 4e-14 seq214663 87.8 5e-13 seq542539 84.2 6e-12 >seq68655 Length=5599 Score = 122 bits (134), Expect = 3e-23 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 26285 CCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCT 26344 || ||||| || ||||| | ||| ||| |||||||| ||||| || || || || ||| Sbjct 963 CCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 904 Query 26345 GCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTA 26404 || |||||||| | ||||| ||| |||||||||||||| || | |||||| |||||| | Sbjct 903 GCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAAAA 844 Query 26405 AAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCT 26464 || || ||| || | ||| |||| ||||| | || || || | | | ||| Sbjct 843 AAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAGCTGCAACATGAGCT 784 Query 26465 GTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGAT-AGTTCCCACT 26519 | |||||||||| ||||| || | ||| || | | || || | |||||||||| Sbjct 783 GAATATGCAACATCAATCCAAGGACGCATACCCA-TGTGGAAATTAAGTTCCCACT 729 >seq539347 Length=3493 Score = 116 bits (128), Expect = 1e-21 Identities = 111/141 (79%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320 || |||||||||| ||| || || ||||| || | ||| ||||| ||| |||||| Sbjct 142 CCATGCATAGCAGTGAATAGGAAACCGCCGAATACAC-AGCTACACCTAACATGTGGAAT 84 Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380 || ||||| || || || || ||||| |||||||| | ||||||||| |||||||||||| Sbjct 83 GGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 24 Query 26381 ATACCAAGAGGCATTCCATCA 26401 || || | |||||| |||||| Sbjct 23 ATTCCTAAAGGCATACCATCA 3 >seq398894 Length=318 Score = 91.5 bits (100), Expect = 4e-14 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 26681 TTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGC 26740 |||||||| || | ||| || || ||||| |||||||| || ||||| |||||||| || Sbjct 318 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 259 Query 26741 GGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATCATA 26800 || || ||||||||||| | ||||| | ||| | | |||| || ||||| Sbjct 258 GGGGCAGCGATGAAGGCGATAATAAATACGGAAGTTGTACTCAATAAGGTAGGGATCATC 199 Query 26801 AGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCA 26850 | || ||||||||||| | || ||| | || ||||| || || | ||| Sbjct 198 AAAACACCGAACCATCCGATGTAAAGATGATTTTCAGTGCTAGTTATCCA 149 >seq214663 Length=1678 Score = 87.8 bits (96), Expect = 5e-13 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 26615 TCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGAT 26674 ||||| || ||||| || || | || ||| || ||| | |||| | | || || Sbjct 1602 TCCCAAATTGGGTACAAGTGCAATCTGATCGCCGCAGAAGTAGGGATAATAACACCAGAG 1543 Query 26675 ATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCT 26734 | |||||||||| ||| | ||| || || ||||| ||||||| || ||||| |||||| Sbjct 1542 GTAATATTGTTTCTGTAAAGTAAAGAACCAGAAACAAGCTCACGAATACCATCAATATCT 1483 Query 26735 ACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGG 26793 || | | || ||||||||||| | ||||| ||| | ||| | | | |||| || Sbjct 1482 ACTAGAAGGGCGGCGATGAAGGCGATAATAAATACA-GAAGTTGTCGTCAATAAGGTAGG 1424 Query 26794 TATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCA 26850 ||||| | || | |||||||| | || ||||| || ||| | || || | ||| Sbjct 1423 GATCATCAAAACACGAAACCATCCGATGTATAGACGATTGTCACTGCTAGTTATCCA 1367 >seq542539 Length=11310 Score = 84.2 bits (92), Expect = 6e-12 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || || ||||| ||||||||||| | ||||||||||| | || |||||| Sbjct 6960 GCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTTATGCATAACTTCCACACCAAGGTTA 7019 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || || ||||| ||| ||||| || Sbjct 7020 GCACGGTTGATGATATCAGCCCAAGTATCAATAATGCGACC-TTAACTATCAACTACAGA 7078 Query 25996 CTGGTTAAAGTTAAA 26010 || || || || || Sbjct 7079 TTGATTGAAATTGAA 7093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144937559385440