Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq68655 152 6e-32 seq539347 143 3e-29 seq214663 118 1e-21 seq398894 109 6e-19 seq337787 98.7 1e-15 seq542539 87.8 2e-12 >seq68655 Length=5599 Score = 152 bits (168), Expect = 6e-32 Identities = 185/252 (73%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| ||||||||||| || || | || |||||||||||||| ||||||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 || || | || | ||| | ||| | ||| | |||| ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || | ||||| |||||| | || |||||||||||||| ||| |||| | || ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541 ||||| ||||| ||||||||||| || ||||||||| | || |||| ||||| ||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 155542 GGATCTCTTTTC 155553 || || || ||| Sbjct 962 GGTTCCCTATTC 973 >seq539347 Length=3493 Score = 143 bits (158), Expect = 3e-29 Identities = 128/159 (81%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 155425 TCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCA 155484 ||||||| |||||| | || |||||||||||||| |||| |||| | || ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 155485 GAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGA 155544 || ||||| ||||||||||| || ||||||||| | || ||||| |||| ||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 155545 TCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCT 155583 | || ||| |||||||||| ||||| ||||| || ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq214663 Length=1678 Score = 118 bits (130), Expect = 1e-21 Identities = 176/250 (70%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 154992 TGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGC 155051 |||||| || | || |||| ||||| ||||| | ||||||||| | | | | | Sbjct 1381 TGACAATCGTCTATACATCGGATGGTTTCGTGTTTTGATGATCCCTACCTTATTGACGAC 1440 Query 155052 TGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCG 155111 || | || ||| |||||||||| || || | || ||||| |||||||||||||| Sbjct 1441 AACTTCTGTATTTATTATCGCCTTCATCGCCGCCCTTCTAGTAGATATTGATGGTATTCG 1500 Query 155112 TGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC 155171 ||| | || ||||||||||| | || | ||||| || | |||||||| | || |||| Sbjct 1501 TGAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAATATTACCTCTGGTGTTATTATCCC 1560 Query 155172 TAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATT-----TGGGAAGCAGCAACTCTT 155226 || ||| || || | | ||||| || || ||| |||||||| ||| || || Sbjct 1561 TACTTCTGCGGCGATCAGATTGCACTTGTACCCAATTTGGGATGGGAAGCTGCATCTGTT 1620 Query 155227 GATGAGTGGT 155236 |||||||||| Sbjct 1621 GATGAGTGGT 1630 >seq398894 Length=318 Score = 109 bits (120), Expect = 6e-19 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| |||| || | | || |||| |||||||||||| | | Sbjct 141 TCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTGA 200 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | | || | || ||| |||||||||| ||||| |||| Sbjct 201 TGATCCCTACCTTATTGAGTACAACTTCCGTATTTATTATCGCCTTCATCGCTGCCCCTC 260 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAA 155147 | ||||| ||||||||||||||||| || || ||||||||||| | ||||| ||||| Sbjct 261 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 318 >seq337787 Length=336 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| |||| || || | || |||| || ||||||||| | | Sbjct 98 TCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGATTCGGTGTTTTGA 157 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTAC--ATGC-TTCATTGTCGCCTTCATTGCTGCAC 155086 ||| |||| ||| | | |||| || ||| || ||| || ||||||| |||| | Sbjct 158 TGACCCCTA-CCTTATTGA--CTGCAACCTATGTATTTATTATCTCCTTCATCACTGCCC 214 Query 155087 CTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACA 155146 |||| |||| ||||||||||||||||| | || || |||||||| | ||||| |||| Sbjct 215 CTCCACTAGATATTGATGGTATTCGTGAGCATGT-TCTTGTTCTTTACTTTATGGAAACA 273 Query 155147 ACATCATCTCTGGTGCTGTTGTCCCTAGTTC 155177 | || |||||||| || |||| | ||| Sbjct 274 ATATTNNNNCTGGTGCTATTATCCCCACTTC 304 >seq542539 Length=11310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/148 (74%), Gaps = 10/148 (7%) Strand=Plus/Minus Query 155818 TTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTC-----ATCCCTACATGGG 155872 ||||| ||||| || |||||||| || |||| ||| ||| || ||| |||| Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGA---TAGT--TAAGGTCGCATTATTGATACTTGGG 7039 Query 155873 CAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACA 155932 | || || | ||||| ||| |||||| ||||||| ||||| | ||||| ||||||| Sbjct 7038 CTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACA 6979 Query 155933 ACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 |||||||||| ||| | |||| || ||| Sbjct 6978 ACTTCCCTCTAGACTTAGCTGATGTTGA 6951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573272225878920