Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq68655 120 9e-23 seq539347 114 4e-21 >seq68655 Length=5599 Score = 120 bits (132), Expect = 9e-23 Identities = 175/240 (73%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 40940 ACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTC 40999 ||| || || || || || | || | ||| |||||||| ||||| || |||||||| || Sbjct 964 ACCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTC 905 Query 41000 TGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGA 41059 ||| ||||| |||| ||| | |||||| || ||| |||||||||||||||||||||| | Sbjct 904 TGCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAAA 845 Query 41060 GAAAGAACCCTGACCGAAT-GGATAAACTAAGAATACAGC--TAG-AGCTGCTGACAATG 41115 |||| || | | ||| || |||| ||||| | ||| ||| |||||| ||| Sbjct 844 -AAAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAGCTGCA-ACAT-- 789 Query 41116 GAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACT 41175 |||||| ||||| ||| ||||| || | |||||| | | | ||||||||||| Sbjct 788 GAGCTGAATATGCAACATCAATCCAAGGACGCATACCCATGTGGAAATTAAGTTCCCACT 729 >seq539347 Length=3493 Score = 114 bits (126), Expect = 4e-21 Identities = 112/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || |||||||||| || | ||| || || || | || || || | ||| |||||| Sbjct 142 CCATGCATAGCAGTGAATAGGAAACCGCCGAATACACA-GCTACACCTAACATGTGGAAT 84 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 || ||||| || |||||||| ||||| ||||| |||| ||| |||||||| || ||| | Sbjct 83 GGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 24 Query 41037 ATTCCTAAAGGCATACCATCAGA 41059 ||||||||||||||||||||||| Sbjct 23 ATTCCTAAAGGCATACCATCAGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141003270782538