Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq68655 167 3e-36 seq539347 140 4e-28 seq542539 86.0 7e-12 >seq68655 Length=5599 Score = 167 bits (184), Expect = 3e-36 Identities = 194/259 (75%), Gaps = 6/259 (2%) Strand=Plus/Minus Query 67756 CACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAA 67815 |||| || || ||||| ||||||||||| |||| || | ||| |||||||| ||||||| Sbjct 977 CACTGAATAGGGAACCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAA 918 Query 67816 GGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAG 67875 |||||||||||||||| ||||| || | ||| ||| ||||||||||| || || | || Sbjct 917 GGATGTTGTGCTCTGCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAG 858 Query 67876 GCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCG--AAT-G 67932 |||| | ||| | || ||| ||| | ||| || | |||||| | ||| | | | Sbjct 857 GCATACCATCAAAAAAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAG 798 Query 67933 CTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAG 67992 ||||| || |||| || ||||| ||| ||||||||||||||||| | || || Sbjct 797 CTGCA---ACATGAGCTGAATATGCAACATCAATCCAAGGACGCATACCCATGTGGAAAT 741 Query 67993 AAAGTTCCCACTGACGACC 68011 ||||||||||| |||||| Sbjct 740 TAAGTTCCCACTCACGACC 722 >seq539347 Length=3493 Score = 140 bits (154), Expect = 4e-28 Identities = 136/174 (78%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||| | || || |||| || Sbjct 173 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCAGTGAATAGGAAACCGCC 114 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 |||||||| ||||| || | ||| |||||||| ||||||||||||||||||||||| || Sbjct 113 GAATACACA-GCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTG 55 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888 ||| || | ||| |||| ||||||||||| || || | |||||| | ||||| Sbjct 54 GAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGA 1 >seq542539 Length=11310 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/155 (74%), Gaps = 5/155 (3%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| || |||| | ||| ||||||||||||||||| ||||| | ||||||||||||| Sbjct 6951 TCAACATCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTTATGCATAACTTCCACA 7010 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACC--ACCTGCGT 67470 ||||| || | ||| | ||| || ||||||||| ||| | ||| | || | Sbjct 7011 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATCAATAATGCGACCTTAACT--AT 7068 Query 67471 CAACGACGGATTGGTTGAAGTTGAAACCGTTGAGG 67505 |||| || ||||| ||||| ||| ||| |||||| Sbjct 7069 CAACTACAGATTGATTGAAATTG-AACGCTTGAGG 7102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555737895564120