Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq68655 150 2e-31 seq507140 141 1e-28 seq539347 131 2e-25 seq398894 118 1e-21 seq216476 118 1e-21 seq214663 109 6e-19 seq337787 107 2e-18 seq428484 105 8e-18 seq550293 100 3e-16 seq281357 91.5 2e-13 seq1096671 87.8 2e-12 seq542539 87.8 2e-12 seq407668 86.0 7e-12 seq569282 84.2 2e-11 seq988277 82.4 9e-11 >seq68655 Length=5599 Score = 150 bits (166), Expect = 2e-31 Identities = 187/256 (73%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 68237 CACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCA 68296 ||||||| || || || || ||||| ||||| | || | ||| ||||| || ||||| | Sbjct 977 CACTGAATAGGGAACCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAA 918 Query 68297 GGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAG 68356 |||||||||||||||| ||||| || | ||| ||||||||||||||| || || | || Sbjct 917 GGATGTTGTGCTCTGCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAG 858 Query 68357 GCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTG 68416 |||| | ||| | || ||| ||| | ||| || | || ||| | || | | | Sbjct 857 GCATACCATCAAAAAAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAG 798 Query 68417 CTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAA 68476 |||||||| | || || ||||||||| ||||||||||||||||| | | | || Sbjct 797 CTGCAACATGAGCTGAATATGCAACATCAATCCAAGGACGCATACCCATGTGGAAATTAA 738 Query 68477 GTTCCCATTCACGTCC 68492 ||||||| ||||| || Sbjct 737 GTTCCCACTCACGACC 722 >seq507140 Length=321 Score = 141 bits (156), Expect = 1e-28 Identities = 191/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 66928 CTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTAT 66987 ||||||| | || || || ||| || ||||| ||||| || ||| | ||||| | Sbjct 319 CTTGAGTTGGGTTAAAAGCACAGAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGT 260 Query 66988 TCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACAC 67047 | ||||| || | |||||||| || | |||| || |||| | | | || || | Sbjct 259 TTTCTACGGTCGCTCCATGAATAGCGCATAGCAGAGCCGCACCTAATACTCGGGCAACTC 200 Query 67048 CCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATC 67107 ||||||||||||| |||||||| ||||| ||||| |||||||| | ||| || | ||||| Sbjct 199 CCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATC 140 Query 67108 GAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGT 67167 |||| || | || || || ||| || || || ||||||| ||||| |||| || | Sbjct 139 GAAATATCGTTGCTACGCCAAAACTCGGCGCAAAGAACCAACCAGATTGCACCAGTGGAT 80 Query 67168 AGATGAGAAAGACACTAACAAAAACA 67193 | || || || ||| |||||||||| Sbjct 79 AAATAAGGAATACAGAAACAAAAACA 54 >seq539347 Length=3493 Score = 131 bits (144), Expect = 2e-25 Identities = 125/159 (79%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 68211 AGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAAC 68270 ||| || |||| |||||||||||| ||| |||| || | || || ||||| | ||| || Sbjct 158 AGAGGTTACCAAGGAACCATGCATAGCAGTGAATAGGAAACCGCCGAATACAC-AGCTAC 100 Query 68271 GCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTA 68330 || | ||| ||||| || ||||| ||||||||||||||||| ||||| || | ||| | Sbjct 99 ACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAA 40 Query 68331 GTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGA 68369 ||||||||||||||| || || | |||||| | ||||| Sbjct 39 GTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGA 1 >seq398894 Length=318 Score = 118 bits (130), Expect = 1e-21 Identities = 138/181 (76%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 68647 TTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGG 68706 ||||| ||||| || | ||||||| |||||| |||||||||||||| || || || || Sbjct 318 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 259 Query 68707 GGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGT-TGCTGCAAGCAGCGTAGGGATCA 68764 || |||||||||||||||| || || || || | | | || ||| || |||||||||| Sbjct 258 GGGGCAGCGATGAAGGCGATAATAAATACGGAAGTTGTACT-CAATAAG-GTAGGGATCA 201 Query 68765 TCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGA 68824 ||| || |||||||| || | |||||| | || || ||| ||| | ||| | ||||| Sbjct 200 TCAAAACACCGAACCATCCGATGTAAAGATGATTTTCAGTGCTAGTTATCCAGTTGCAGA 141 Query 68825 A 68825 | Sbjct 140 A 140 >seq216476 Length=3150 Score = 118 bits (130), Expect = 1e-21 Identities = 172/238 (72%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 67041 GCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGA 67100 || || |||||||||||||| |||||||| |||| ||||| |||||| | | ||| || Sbjct 2766 GCAACTCCCATCATATGAAATGGGTTCAACATCCAATTATGAAATCCTAG-AAGAAAAGG 2824 Query 67101 AGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCC 67160 | ||||| ||| || |||| || || ||| || | || ||||||| ||||| ||| Sbjct 2825 ATGAATCAAAACATCGCTGCTACACCAAAACTCGGCACAAAGAACCAACCAGATTGCCCC 2884 Query 67161 AGAGGGTAGATGAGAAAGACACTAAC-AAAAACAGCGATAGGACCAGAGAACGCAATAGC 67219 || || || | || || || ||| ||||||| | || ||||||||||| | || || Sbjct 2885 AGTGGATAAAGAAGGAATACGGAAACAAAAAACAACAATTGGACCAGAGAATGGGATTGC 2944 Query 67220 ATTGTAGGGACGGATACCGATGAGA-CGTGCCAGTTCAAACTGGCGAAGCATGAAACC 67276 ||| || | || | || | ||| || | ||||||| ||||| | ||||||||| Sbjct 2945 ATTATAAAGTCGCA-ACTAAATAGATCGATCATGTTCAAATTGGCGTAACATGAAACC 3001 >seq214663 Length=1678 Score = 109 bits (120), Expect = 6e-19 Identities = 190/274 (69%), Gaps = 7/274 (3%) Strand=Plus/Minus Query 68558 ACCACTCATCAAGGGTTGCTGCTTCCCA-----AATGGGATAAAAGTGAAGACCAATTGC 68612 |||||||||||| | ||| |||||||| ||| || || ||||| | | || || Sbjct 1630 ACCACTCATCAACAGATGCAGCTTCCCATCCCAAATTGGGTACAAGTGCAATCTGATCGC 1571 Query 68613 ATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGC 68672 ||| |||| | || | ||||||| | || ||||| | || || | ||||||| Sbjct 1570 CGCAGAAGTAGGGATAATAACACCAGAGGTAATATTGTTTCTGTAAAGTAAAGAACCAGA 1511 Query 68673 AACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA 68732 |||| | |||||||||||||| || || || | | || ||||||||||||| || || Sbjct 1510 AACAAGCTCACGAATACCATCAATATCTACTAGAAGGGCGGCGATGAAGGCGATAATAAA 1451 Query 68733 -ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAA 68791 ||||| | | | ||| || ||||||||||||| || | ||||| || | ||| | Sbjct 1450 TACAGAAGTTGTCGTCAATAAG-GTAGGGATCATCAAAACACGAAACCATCCGATGTATA 1392 Query 68792 GGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 | || || || || ||| | ||| | | |||| Sbjct 1391 GACGATTGTCACTGCTAGTTATCCAGTTGTAGAA 1358 >seq337787 Length=336 Score = 107 bits (118), Expect = 2e-18 Identities = 159/220 (72%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 68617 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACA 68676 ||| | || | || |||||||| || ||||| ||||| || | |||| || |||| Sbjct 304 GAAGTGGGGATAATAGCACCAGNNNNAATATTGTTTCCATAAAGTAAAGAACAAG-AACA 246 Query 68677 GGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACA 68735 | |||||||||||||| || || | || || |||| |||||||| || || || ||| Sbjct 245 TGCTCACGAATACCATCAATATCTAGTGGAGGGGCAGTGATGAAGGAGATAATAAATACA 186 Query 68736 GATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGC 68794 | |||||| | ||| || |||||| |||||| || ||||| || || | |||||| | Sbjct 185 TA-GGTTGCAGTCAATAAG-GTAGGGGTCATCAAAACACCGAATCATCCGATGTAAAGAC 128 Query 68795 GGTTCTCTGTGGAAGTCACCCATTCGCAGAATGAATCCCA 68834 | || || ||| ||| | ||| | |||||| |||||| Sbjct 127 GATTTTCAGTGCTAGTTATCCAGTTGCAGAAGTGATCCCA 88 >seq428484 Length=423 Score = 105 bits (116), Expect = 8e-18 Identities = 101/128 (79%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 66834 ATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAGACCAGAAG 66893 ||||| | ||| ||||| | |||||| ||| |||| ||||||||| || ||||| ||| Sbjct 343 ATAAA-AGATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAAAAG 285 Query 66894 CGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATGCTTTGAAA 66953 ||||| ||||| |||||||| ||||||||||| |||||||| | || || || ||| Sbjct 284 CGGTTAGCAGTGACCATTGAATAAGTTTCTTCATCTTGAGTTGGGTTAAAAGCACGGAAG 225 Query 66954 GTGTTTGC 66961 || ||||| Sbjct 224 GTATTTGC 217 >seq550293 Length=8024 Score = 100 bits (110), Expect = 3e-16 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 67044 ACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGG 67103 || |||||||||||||| |||||||| |||| ||||| || | ||| | ||| | | | Sbjct 7339 ACTCCCATCATATGAAATGGGTTCAACCTCCAATTATGTAAACATTGGAAGAAAATGATG 7398 Query 67104 AATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGA 67163 |||| ||| || | || | | |||| | || || ||||||| ||||| || || Sbjct 7399 AATCTAAATATCGTTGCTATGCTGAAACTCGATGCAAAGAACCAACCAGATTGCCCGAGT 7458 Query 67164 GGGTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTG 67223 || || || | || | | ||| |||| ||| || |||| |||||||| || ||||| Sbjct 7459 GGATAAATAAAGAATAGA-TAAACAAAATAGCAATTGGACTAGAGAACGAGATTGCATTA 7517 Query 67224 TAGGGACGGATACCGATGAGA-CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAG 67282 || | || | | || ||| || || |||||||| | | | ||||||||| ||| | Sbjct 7518 TAAGATCGTA-ATTGAACAGACCGAGCAAGTTCAAATTAATGTAACATGAAACCTATTGG 7576 Query 67283 AGCGAAAGC 67291 || ||||| Sbjct 7577 TGCAAAAGC 7585 >seq281357 Length=578 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || |||||||| ||| || Sbjct 539 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAATTAACAGCCGACCGC 482 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 481 TCTACCACTGAGCTACTGAGGA 460 >seq1096671 Length=312 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/84 (85%), Gaps = 4/84 (5%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||||||||||||| ||||||| |||| || Sbjct 301 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGATCGC 244 Query 35561 TCTGCCG--CTGAGCTACTGAGGA 35582 ||| ||| |||||||| |||||| Sbjct 243 TCTACCGAACTGAGCTATTGAGGA 220 >seq542539 Length=11310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| || |||| | ||| |||||||||||||| || ||||| | |||||||||||||| | Sbjct 6951 TCAACATCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTTATGCATAACTTCCACA 7010 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953 || | ||| ||||||| | || ||||| ||| | || ||| |||||||| Sbjct 7011 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATCAATAATGCGACCTTAACTATCA 7070 Query 67954 AGGATAGACTGGTTGAAGTTGAA 67976 | | ||| || ||||| ||||| Sbjct 7071 ACTACAGATTGATTGAAATTGAA 7093 >seq407668 Length=643 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/130 (75%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 67947 ACTATCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAAC 68006 ||||| || | ||| |||||||| ||||||||||| |||||||| ||| || |||| Sbjct 394 ACTATTAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAAGCATAGTACTAAT 453 Query 68007 ACCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGA 68066 || || | |||||||||||| || || |||| ||| ||||| |||||||| | | Sbjct 454 ACTAA-AGTAGTGAACCAGATTCCTACTACAGACCA---AGCAACCAAGAAGTGTAAAAA 509 Query 68067 ACGGGAGTTG 68076 ||| ||| || Sbjct 510 ACGAGAGCTG 519 >seq569282 Length=3812 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/84 (83%), Gaps = 4/84 (5%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||||||||||||| ||||||| |||| || Sbjct 527 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGATCGC 584 Query 35561 TCTGCCG--CTGAGCTACTGAGGA 35582 ||| ||| | |||||| |||||| Sbjct 585 TCTACCGAACCGAGCTATTGAGGA 608 >seq988277 Length=353 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||||| |||| || ||||||| ||| || Sbjct 146 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACCACCAGTCAGTTAACAGCCGACCGC 203 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 204 TCTACCACTGAGCTACTGAGGA 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560744119389240