Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq122391 122 2e-22 >seq122391 Length=5611 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||| | ||| ||||||||||| ||||| || || || | || | ||| || ||| || Sbjct 2948 AATCTGTATCCCACCTCTCAACCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTT 2889 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | || || | ||| || | ||||||||| ||||| || | |||||||| Sbjct 2888 GTAATCAGCCAAGGTGCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATAAGCCTCTGTTG 2829 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || || || || || || || |||| ||| | ||| ||| ||||| || Sbjct 2828 GTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGA 2769 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 2768 ACTCTCAACCTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 2712 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| ||||| || || || | || | ||| || || || || ||| Sbjct 3397 ATACCACCTCTCAGGCGAAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCG 3338 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | || ||||||||||| || | ||||| || ||||| Sbjct 3337 GCCAATGTGCGCCCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGC 3278 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || |||| || ||||| ||| || ||||| |||| Sbjct 3277 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTAATATTATCAATGGTGTCGGAGCTCTCA 3218 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || ||||| || |||||||| || ||||| Sbjct 3217 ACCTCAAGTGTAATGGTCTTCCCAGTTAGTGTCTTTACAAAGATCTGCAT 3168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 881867029224240