Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq122391 86.0 1e-11 seq46261 86.0 1e-11 >seq122391 Length=5611 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| || || || |||| |||| |||||| ||||||||||| | ||| Sbjct 2893 ATGTTGTAATCAGCCAAGGTGCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATAAGCCTC 2834 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || || || || || || || || || || || ||| ||||| || | | Sbjct 2833 TGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTA 2774 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| || || || ||||| || || || || || | || || | ||| |||||| Sbjct 2773 TCTGAACTCTCAACCTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGC 2714 Query 192535 AT 192536 || Sbjct 2713 AT 2712 >seq46261 Length=4898 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || || || | || | |||||| ||| || |||||| Sbjct 458 ATGCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCA 517 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||| || |||| || | || || ||||||||||| | |||||| || || || Sbjct 518 GCTAGTGTCCGCCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGGTCCGGA 577 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || || ||||| || | || || || || Sbjct 578 GGGATACCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAATTGTGTCAGAGGACTCG 637 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || | || || | ||| |||||||| Sbjct 638 ACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTCTTCACAAAGATCTGCAT 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 964528901499450