Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq550349 143 8e-29 seq52453 143 8e-29 seq47173 140 9e-28 seq15485 132 1e-25 seq39605 118 3e-21 seq4015 96.9 1e-14 seq537480 93.3 1e-13 seq124076 86.0 2e-11 seq1485261 84.2 6e-11 >seq550349 Length=14298 Score = 143 bits (158), Expect = 8e-29 Identities = 223/316 (71%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||||||| |||||| ||| | | | ||||||||||| || || || ||||| Sbjct 6816 CATAATGTCCTCCATAGCCTTCACGAGCCTCCGCTGAATATATCCCGTCTCGGAGGTTTT 6757 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| | ||| | | ||||||||||||||||||||| | |||| || Sbjct 6756 CACAGCAGTATCAATCAAACCTTCTCTACCACCCATAGCATGGAAGAAAAATTCTTGTGG 6697 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC-GGGC--GAATCGTC 302741 | || || | || | ||| ||||||| || ||||| || |||| |||| || Sbjct 6696 TGTCAGACCTCGAAGGTAAGAGTTCTCAACAAACCCACGACTTTCAGGGCCATAATCATC 6637 Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATC 302801 || || ||||| |||| || | | || | || |||| || ||||| || || Sbjct 6636 ---TTTCGTGAAGTGGGGCAATGTACGATCAACAAAACCAAATGGAATCCGCTTGCCCTC 6580 Query 302802 AACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGA 302861 ||| ||||||||||| | || | | |||| ||||||||||| | |||||| || || Sbjct 6579 AACATTCTGCTGTCCGACACAAGCAGTCATTTGCGAAATATTAATGAAACTGCCTTTTGA 6520 Query 302862 GCCAGCATTTACCATA 302877 ||| ||| | |||||| Sbjct 6519 GCCTGCAGTGACCATA 6504 >seq52453 Length=11482 Score = 143 bits (158), Expect = 8e-29 Identities = 240/343 (70%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| ||||| ||| || | ||| ||||| ||||| ||| | | | ||| Sbjct 2852 TTTCTCACGGTACCATCGTATTTCACCATGATGTCCTCCATGGCCTTCACGAGCCTCCGC 2793 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| ||||| || ||||| ||||| |||||||| | ||| | | ||||||| Sbjct 2792 TGAATATATCCAGTCTCGGAAGTTTTCACAGCAGTATCAATCAAACCTTCTCTACCACCC 2733 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGT---AGCCCCCCAATAAAGGAGCTCTCAACG 302715 |||||||||||||| | ||||||| || || || | || | ||| |||| ||| Sbjct 2732 ATAGCATGGAAGAAGA---ATTCCGGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACG 2676 Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTC 302774 || ||||| ||||| ||||| | ||| || ||||| |||| || | | Sbjct 2675 AATCCACGGCTTTCGGGGCTGTCGTC-ATTTTGCGTGAAGTGGGGCAATGTACGACCAGC 2617 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | | || ||||||| | ||| || ||||| ||||||||||| | ||| | ||||||| Sbjct 2616 AAAACCAAATGGGATCCTCTTGCCCTCAACATTCTGCTGTCCGACGCAAGCGGTCATCTG 2557 Query 302835 CGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 ||||||||| | |||||| || ||||| ||| | |||||| Sbjct 2556 CGAAATATTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 2514 >seq47173 Length=9120 Score = 140 bits (154), Expect = 9e-28 Identities = 239/342 (70%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| ||||| |||||| | ||| ||||| |||||| ||| | | | ||| Sbjct 4901 TTTCTCACGGTGCCATCATATTTCACCATGATGTCCTCCATAGCCTTCACCAGCCTCCGC 4842 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || ||||| ||||| ||| ||||| ||||| |||||||| | ||| | | ||||||| Sbjct 4841 TGGATATATCCAGTCTCAGAAGTTTTCACAGCAGTATCAATCAAACCTTCTCTACCACCC 4782 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCA-ATAAAGGAGCTCTCAACG 302715 |||||||||||||| | || | ||| || |||| | | |||| ||| |||| || Sbjct 4781 ATAGCATGGAAGAAAAATTCCTGTGGT-GTCAAGCCTCGGAGATAA--GAGTTCTCCACA 4725 Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775 || ||||| || || | ||| ||||| ||||| |||| || | | || Sbjct 4724 AATCCACGGCTTTCAGGGCCGTAGTCATCTTTGGTGAAGTGGGGCAACGTACGATCAACA 4665 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || |||| || ||||| || ||||||||||||||||| | || | | |||| || Sbjct 4664 AAACCAAATGGAATCCGCTTGCCCTCAACGTTCTGCTGTCCGACACAAGCAGTCATTTGT 4605 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||||| | |||||| || ||||| ||| | |||||| Sbjct 4604 GAAATATTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 4563 >seq15485 Length=3081 Score = 132 bits (146), Expect = 1e-25 Identities = 235/340 (69%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 || || ||||| |||||| | ||| ||||| ||||| ||| | | | ||| Sbjct 321 TTCCTCACGGTACCATCATATTTCACCATGATGTCCTCCATGGCCTTCACAAGCCTCCGC 380 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| ||||| ||| ||||| ||||| ||||| || | ||| | | ||||||| Sbjct 381 TGAATATATCCAGTCTCAGAAGTTTTCACAGCAGTATCTATCAAACCTTCTCTACCACCC 440 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||||| | || || ||| || || | || | ||| ||| ||||| Sbjct 441 ATAGCATGGAAGAAGAATTCCTCTGGTGTCAGGCCTCGAAGGTAAGAGTTCTGCACGAAT 500 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| ||||| || || | |||| | ||||| |||| || | || | Sbjct 501 CCACGGCTTTCGGGGCCATAGT-TATCTTGCGAGAAGTGGGGCAATGTGCGACCAGCAAA 559 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || ||||||| | ||| || ||||| ||||||||||| | ||| | | |||| ||||| Sbjct 560 TCCAAATGGGATCCTCTTGCCCTCAACATTCTGCTGTCCGACGCAAGCAGTCATTTGCGA 619 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||| | |||||| || ||||| || | |||||| Sbjct 620 AATATTAATGAAACTGCCTTTTGAGCCTGCGGTGACCATA 659 >seq39605 Length=11604 Score = 118 bits (130), Expect = 3e-21 Identities = 173/240 (72%), Gaps = 11/240 (5%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||||||||||| ||||||||| ||||| | |||| | | || | | || || | Sbjct 5779 ACCAACAGCATCAAGTTCGTCAATAAAAATGATTGACGGGGCAGCTTCTTTGGC--TTCC 5836 Query 289089 --AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||||| |||||||||| |||||| |||||| ||||||| |||||||| | Sbjct 5837 TTGAATAATTCCCTTACACGGGCTGCTCCTCTTCCAACAAACATTTCGACAAATTCGCTA 5896 Query 289147 GCGGATACTTGAATGAATG---TTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || || || | ||||| || || || || ||||| |||||| ||||||| | Sbjct 5897 GCAGAAACAGAGAAGAATGGAATTCCA---GCCTCTCCTGCAACTGCCTTCGCCAGCAAA 5953 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGC 289262 || || || |||||||| || || | | ||||| ||| | |||| | |||| |||||| Sbjct 5954 GTTTTCCCGGTTCCAGGAGGGCCAGCAAGCAGAACACCCCTGGGTAATCTTGCTCCCAGC 6013 >seq4015 Length=6327 Score = 96.9 bits (106), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 4/114 (4%) Strand=Plus/Minus Query 156041 AGCAAAACT-ACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGA 156096 || ||||| ||| || |||||||| || ||||||||||| |||||||| | ||||| Sbjct 1514 AGTAAAACGCACCCTTTCTCTTGCCTCCGCCTTGATCTACATAACGAGCAGTATCATTGA 1455 Query 156097 AGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 |||||| || |||||||| ||| |||||||| || || || || || ||||||| Sbjct 1454 AGACACGTAACATAGGAACAATCCCATTGGACGTCCCGTTTGTCCCTCGAATAT 1401 >seq537480 Length=7730 Score = 93.3 bits (102), Expect = 1e-13 Identities = 214/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||||||||| ||||| || | | || || | | || | || | Sbjct 4103 ACCAATTGCATCAATTTCATCAATAAATACAATACTAGGTGCACATTCCCGAGCTTCTTG 4044 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| ||| || | ||||| ||||| ||||||| ||||||| | || || ||| | Sbjct 4043 AAATAAGCTTCTCACCCTGGATGGTCCAACACCAACAAACATTTCCAAGAAGTCTGAACC 3984 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | | || | ||| | |||| | || || || || | || || || |||| Sbjct 3983 AGA-AATAGACAAGAAAGGTACACCAGACTCTCCAGCGGTAGCTTTAGCAAGGAGAGTCT 3925 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 | ||||| ||||| || || | ||| | |||||||||| ||| || |||||| | Sbjct 3924 TTCCTGTGCCAGGGGGGCCACAAAGAAGAGCACCCTTTGGTATTTTAGCTCCCAGC-GCT 3866 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||| ||||| | || | || | |||| |||| | ||| | ||| || ||| Sbjct 3865 TCATATTTGTCAGGATTTTTCAGGAAATGAACAAATTCCATGATTTCTTGTTTAGCTTCA 3806 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 3805 TCACAACCAGCTACATC 3789 >seq124076 Length=6451 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 5979 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 6038 Query 409011 TAGAACAtttttttA 409025 || |||||||||| Sbjct 6039 GGGAGCATTTTTTTA 6053 >seq1485261 Length=10756 Score = 84.2 bits (92), Expect = 6e-11 Identities = 180/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| | |||||| | ||||| ||||| ||| || ||||||| | || || ||| | Sbjct 5359 AATAAGTTTCTTACCCTGGATGGTCCAACACCTACGAACATTTCCATGAAATCGGAACCA 5418 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | | || || || | ||| | ||| |||||| || | || || || ||||| Sbjct 5419 GAAA-TGGACATAAAGGGCACACCAGATTCTCCTGCTGTAGCTTTAGCAAGTAGAGTCTT 5477 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 || |||||||| || || | | ||| | || ||||||| || || |||| | || Sbjct 5478 TCCAGTTCCAGGAGGACCTACAAGCAGAGCACCTTTTGGTATCTTAGCTCCCAACT--CT 5535 Query 289268 T-ATATTTCTCAGGGCTCTTTAA--AAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 | ||| |||| ||| | ||||| |||| | |||| ||| | ||| | ||| || | Sbjct 5536 TCATACTTCTT-GGGATTTTTAAGGAAATGC-ACAAACTCCATTATTTCTTGTTTAGCTT 5593 Query 289325 CATCACATCCTGCTACATC 289343 ||||||| ||||||||||| Sbjct 5594 CATCACAGCCTGCTACATC 5612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1441990302429259