Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq68655 161 1e-34 seq507140 147 2e-30 seq539347 138 1e-27 seq216476 136 4e-27 seq466961 114 1e-20 seq550293 102 9e-17 seq428484 100 3e-16 seq532379 93.3 5e-14 seq182135 93.3 5e-14 seq542539 87.8 2e-12 >seq68655 Length=5599 Score = 161 bits (178), Expect = 1e-34 Identities = 187/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 157913 GGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATAT 157972 || ||||||||||||||| | || | |||||||| || ||||| ||| |||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 157973 TCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 158032 || |||| || || || | ||||| | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 158033 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158092 || | |||| ||||||| | || |||||||||||||| ||| ||| |||||||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 158093 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158152 ||||| ||||||||||||||||| || ||||| ||| | ||| | ||||| |||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 158153 GGATCTCTTTTC 158164 || || || ||| Sbjct 962 GGTTCCCTATTC 973 >seq507140 Length=321 Score = 147 bits (162), Expect = 2e-30 Identities = 195/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 159699 ATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTC 159758 |||| ||||||||| || ||||| || || ||| ||| || || ||||||| || Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 159759 GCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCAC 159818 || ||| ||||| || ||| | || ||| ||||| | | ||| | ||||||||||| Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 159819 AACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTA 159878 || |||||||| || || || ||||||||||||||||| | || |||||| || || Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 159879 CTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCA 159938 || | || || ||||| | || ||||| ||||| || | ||| || || || ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 159939 AATACCTTTAAGGCGTTTGATTCAACTCAAG 159969 |||||||| || ||| | ||||||||| Sbjct 289 AATACCTTCTGTGCTTTTAACCCAACTCAAG 319 >seq539347 Length=3493 Score = 138 bits (152), Expect = 1e-27 Identities = 117/143 (82%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 158036 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCA 158095 || |||| ||||||| | || |||||||||||||| |||| ||| |||||||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 158096 GAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGA 158155 || ||||||||||||||||| || ||||| ||| | ||||| ||| | |||||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 158156 TCTCTTTTCTCTGCTATGCACGG 158178 | || ||| |||||||||| || Sbjct 120 TTCCTATTCACTGCTATGCATGG 142 >seq216476 Length=3150 Score = 136 bits (150), Expect = 4e-27 Identities = 190/261 (73%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 159621 GGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTATCCGTCCTTACAATGC 159679 ||||||||| | || || ||||||| | || ||| || || | || | ||| ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 159680 TATTGCGTTCTCTGGTCCTATTGCTGTTTTT-GTCAGCGTCTTCCTCATCTACCCATTGG 159738 || | ||||||||||| |||| ||||||| || ||| ||||| | || ||| ||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 159739 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGT 159798 | || || ||||||| || | ||| ||||| || ||||| || ||| ||||| | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 159799 TGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTG 159858 | ||| ||| ||||||||| || |||| ||| || || || ||||||||||||||||| Sbjct 2822 TTTTC-TTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGCCA 2764 Query 159859 GTATACTAGGTGGAGCACTAC 159879 ||| |||| | || |||| Sbjct 2763 AAATATTAGGCGTGGCTCTAC 2743 >seq466961 Length=778 Score = 114 bits (126), Expect = 1e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 160170 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGT 160229 |||||||| ||||||||||| ||||| |||||||| || || || ||||| || | ||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 160230 GCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTG 160289 || ||| ||||| || ||||| || |||||||| |||| ||||| ||||| || | Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 160290 CCTAGAGGCAACGCCCTTTAATAAA 160314 || | || ||||| ||||||| || Sbjct 657 CCACGTGGAAACGCTCTTTAATGAA 633 >seq550293 Length=8024 Score = 102 bits (112), Expect = 9e-17 Identities = 176/252 (70%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTA 159663 ||| || || | ||| ||||||||| | | | | |||||||| || || ||| | | Sbjct 7586 TGCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT- 7528 Query 159664 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 159723 | || |||| ||||| || |||||||| |||| |||||| |||| | | | | ||| Sbjct 7527 TACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATTCT 7469 Query 159724 TCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 159783 | || || ||| | || || || ||||||| || || || || | | ||| | | Sbjct 7468 TTATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGA 7409 Query 159784 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATA 159843 | ||||||||| | | ||| | ||| | || || || |||| ||| || || || |||| Sbjct 7408 TATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATA 7349 Query 159844 TGATGGGAGTTG 159855 |||||||||||| Sbjct 7348 TGATGGGAGTTG 7337 >seq428484 Length=423 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 159936 GCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACT 159995 ||||||||||| || ||| | |||||||||| || || ||||| || ||||||||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 159996 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 160055 || |||||||| ||||| || ||||| ||| |||| ||||| || || || ||| | ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 >seq532379 Length=15352 Score = 93.3 bits (102), Expect = 5e-14 Identities = 127/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 159321 CGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTG 159380 || || || || |||||||| || |||||||| ||| | || |||| ||||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 159381 GCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTT 159440 || | || ||||| |||| || ||| ||||||| || |||||| ||||| | | | Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCATGAT-TG 14503 Query 159441 GCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGC 159496 |||||||||||| | || || ||| ||| | || |||| || || || ||||| Sbjct 14504 GCTAGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGC 14559 >seq182135 Length=1057 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 160166 AGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACT 160225 ||| |||||||| ||||||||||| ||||| |||||||| || || || ||||| || | Sbjct 717 AGCGGAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTAT 776 Query 160226 ACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCC 160276 ||||| || ||||| || ||||| || |||||||| |||| ||||| Sbjct 777 TCGTGCGTGAATGGCAACTCAAGATCAGCCTCATGAAAATCTTATATTCCC 827 >seq542539 Length=11310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 158429 TTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGAT 158488 ||||| ||||| || || | ||||| || | ||||| | | | || ||||| ||| Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 158489 GTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTC 158548 | | ||||| ||| |||||| |||||||||||||| | ||||| || ||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 158549 CCACTCGACCTTGCTGCTGCTGA 158571 || || ||| | |||| || ||| Sbjct 6973 CCTCTAGACTTAGCTGATGTTGA 6951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537532304661240