Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq68655 158 1e-33 seq507140 129 6e-25 seq466961 127 2e-24 seq532379 122 9e-23 seq216476 122 9e-23 seq539347 116 4e-21 seq428484 102 9e-17 seq182135 98.7 1e-15 seq550293 95.1 1e-14 seq1484923 87.8 2e-12 seq207681 87.8 2e-12 seq680530 86.0 7e-12 seq40677 84.2 2e-11 >seq68655 Length=5599 Score = 158 bits (174), Expect = 1e-33 Identities = 186/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 151172 GGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATAC 151231 ||||||||||||||||| || || | ||||||||||||| ||||| |||||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 151232 TCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCT 151291 || |||| ||||| ||| | | ||| | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 151292 TTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAA 151351 || | ||||| ||||| | || || ||||| || |||||| ||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 151352 GCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGT 151411 |||||||||||||| || ||||| || ||||| ||| | ||| | |||||||| ||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 151412 GGATCGCTCTTC 151423 || || || ||| Sbjct 962 GGTTCCCTATTC 973 >seq507140 Length=321 Score = 129 bits (142), Expect = 6e-25 Identities = 188/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 152769 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 152828 |||||||||| || || || || || || |||| ||||| ||||||| || || || Sbjct 54 TGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTTGCGCC 113 Query 152829 ATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTG 152888 ||| || || ||| | || || |||||| | || ||| | |||||||| || || || Sbjct 114 GAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTG 173 Query 152889 GACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTC 152948 ||| ||||| || |||||||||||||| ||||| | | || || | ||| |||| | Sbjct 174 GACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTGCTATG 233 Query 152949 TGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACAC 153008 || |||||||| | || ||||| || ||| | | | | || ||||| ||||| || Sbjct 234 CGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATAC 293 Query 153009 TTTCAAAGCTTTCGACAGCACTCAAG 153034 ||| ||||| || ||||||| Sbjct 294 CTTCTGTGCTTTTAACCCAACTCAAG 319 >seq466961 Length=778 Score = 127 bits (140), Expect = 2e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 153235 GAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGT 153294 |||||||||||||||||||| ||||| || || ||||| ||||| ||||| ||| ||||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 153295 GCTTGGTTGGCACCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTG 153354 || ||| ||||| || || || |||||||| || | | |||||||||||||| | Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 153355 CCACGAGGCAACGCTCT 153371 ||||| || |||||||| Sbjct 657 CCACGTGGAAACGCTCT 641 >seq532379 Length=15352 Score = 122 bits (134), Expect = 9e-23 Identities = 167/230 (73%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 152389 GACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 152448 ||||||||||||||||| || |||||||| || | || ||||| ||||||| | ||| Sbjct 14388 GACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 14447 Query 152449 ATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCA 152508 | || ||||| |||| ||||| ||||| | || ||||||||| || | ||||| Sbjct 14448 TTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCA-TGATTGGCT 14506 Query 152509 AGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 152568 ||||||||| |||| ||| || ||| | || || | ||||||||| || || || | Sbjct 14507 AGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGCCAATAGT 14566 Query 152569 ATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTT 152618 | | |||| | |||| || ||||| || || || ||||| ||||| Sbjct 14567 TTAGCACATT---TGTTGCTACTATGGGG-CCCGAAGCACAAGGAGATTT 14612 >seq216476 Length=3150 Score = 122 bits (134), Expect = 9e-23 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 152686 GGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGC 152744 ||||||||| | ||||| ||||||| | || ||| | || | || | || ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 152745 TATTGCGTTCTCTGGTCCTATCGCTGTTTTT-GTTAGCGTCTTTCTCATCTACCCTCTGG 152803 || | ||||||||||| || | ||||||| ||| ||| || || | || || |||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 152804 GTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTC 152863 | ||||| ||||||| || | || ||| || || ||||| || || ||||| | | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 152864 TCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTGC 152921 | ||| ||| |||||| || || |||| ||||| || |||||||||||||| ||||| Sbjct 2822 TTTTC-TTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq539347 Length=3493 Score = 116 bits (128), Expect = 4e-21 Identities = 122/159 (77%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 151295 TCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCA 151354 ||||||| ||||| | || || ||||| || ||||||| ||| |||| ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 151355 GAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGA 151414 ||||||||||| || ||||| || ||||| ||| | ||||| ||| |||| ||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 151415 TCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCT 151453 | || ||| | || ||||| ||||| |||| || ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq428484 Length=423 Score = 102 bits (112), Expect = 9e-17 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 153001 GCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACT 153060 ||||| || ||| ||||| || |||||||| ||||| || ||||| ||||| ||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 153061 GCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCAT 153120 |||||||| || |||||||| || ||||| |||||||| ||||||||| ||| | ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 153121 TTCTTTAT 153128 | ||||| Sbjct 337 CT-TTTAT 343 >seq182135 Length=1057 Score = 98.7 bits (108), Expect = 1e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 153235 GAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGT 153294 |||||||||||||||||||| ||||| || || ||||| ||||| ||||| ||| ||||| Sbjct 721 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 780 Query 153295 GCTTGGTTGGCACCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGT 153350 || || ||||| || || || |||||||| || | | |||||| | ||||| Sbjct 781 GCGTGAATGGCAACTCAAGATCAGCCTCATGAAAATCTTATATTCCCTAAGGAGGT 836 >seq550293 Length=8024 Score = 95.1 bits (104), Expect = 1e-14 Identities = 174/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 152671 GCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTAT 152729 ||||| || | ||| ||||||||| | | | |||||||| || || ||| || | | Sbjct 7585 GCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT-T 7527 Query 152730 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 152789 || | || ||||| || |||||||| |||| || ||| |||| ||| | | || | Sbjct 7526 ACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATTCTT 7468 Query 152790 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 152849 || || || || || ||||| ||||||| || || | |||| | | ||| | || Sbjct 7467 TATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGAT 7408 Query 152850 CTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATAT 152909 || ||||| | | ||| | ||| | || || || |||| ||||| || |||||||| Sbjct 7407 ATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATAT 7348 Query 152910 GATGGGTGTTG 152920 |||||| |||| Sbjct 7347 GATGGGAGTTG 7337 >seq1484923 Length=1633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 153065 ACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCT 153124 |||| || |||||||| || ||||| |||||||| ||||||||| ||| | ||||||| Sbjct 1541 ACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCT 1600 Query 153125 TTATGCTGTTTGTACCTGTTATGGGTCTTTGGA 153157 ||||||| |||||||| || | ||| | |||| Sbjct 1601 TTATGCTATTTGTACCCGTCACCGGTTTATGGA 1633 >seq207681 Length=5110 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 152369 TGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTT 152427 ||||||||||| ||| || | ||||||||||||||||| || |||||||| || | | Sbjct 4655 TGGATGACTGG-TTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCCC 4597 Query 152428 TTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 152477 ||||| ||||||| | ||| | || |||||| |||| ||||| ||||| Sbjct 4596 TTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTT 4547 >seq680530 Length=586 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 151052 GCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTAC 151111 || ||||| ||||||| || || || |||||||| || | | ||||| ||| | ||| Sbjct 50 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATTTGCTGATGAGTGGTTATAC 109 Query 151112 AACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATG 151171 || |||||||||| | || |||| | ||||| | ||||| | | ||| ||| Sbjct 110 AATGGTGGTCCTTATGAGCTAATTGTTCTAAACTTCTTACTTGGTGTAGCTTGTTATATG 169 Query 151172 GGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGC 151208 ||||||||||||||||| || ||| |||| |||| Sbjct 170 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGCATGC 206 >seq40677 Length=4500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 151166 TACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GT 151224 || |||||||||||||||||||| || || ||||||||||||| ||||| ||| || Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGAT-TGCTGT 96 Query 151225 TGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCA 151284 |||||| || ||| ||||| ||||| | || ||| ||| | | || ||| | || || Sbjct 95 TGCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGGCCA 36 Query 151285 AGG 151287 ||| Sbjct 35 AGG 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538755630032040