Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq539347 127 2e-24 seq68655 113 5e-20 seq532379 84.2 2e-11 >seq539347 Length=3493 Score = 127 bits (140), Expect = 2e-24 Identities = 122/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 72691 TCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCA 72750 |||||||||||||| |||| ||||| ||||| |||||||| ||| | || ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 72751 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT 72810 || |||||||| || ||||| || ||||| ||| ||||||||| || | ||||| ||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 72811 AGTCTCTTCAGTGCAATGCACGGTTCACTTGTTA 72844 || |||| ||| ||||| ||||| |||| || Sbjct 120 TTCCTATTCACTGCTATGCATGGTTC-CTTGGTA 152 >seq68655 Length=5599 Score = 113 bits (124), Expect = 5e-20 Identities = 165/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 72598 GGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAG-T 72656 || ||| | |||||||| ||| ||||| ||||| | ||| |||||| | | | | Sbjct 752 GGTATGCGTCCTTGGATTGATGTTGCATATTCAGCTCATGT---TGCAGCTACTACTGCT 808 Query 72657 ATTC-CTTG-TGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714 ||| |||| | || || | ||| | | || | |||||||||||| |||| ||| Sbjct 809 ATTTTCTTGATTTACCCTATTGGTTAAGTAAGCTTTTTTGATGGTATGCCTTTAGGAATC 868 Query 72715 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 72774 || ||||| |||||| | ||| | || ||||| ||||| |||||||| || ||||| || Sbjct 869 TCTGGTACTTTCAACATTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCA 928 Query 72775 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTG 72823 ||||| ||| |||| |||| ||| | ||||| ||| || ||||||| Sbjct 929 TTCCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCCCTATTCAGTG 977 >seq532379 Length=15352 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 73394 GATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCA 73453 || |||||||| || | ||||||||||| || || || || ||||||||||| | || Sbjct 14388 GACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 14447 Query 73454 ATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCA 73513 | || ||||||| || || ||||| || || | ||||| || |||| | | || Sbjct 14448 TTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCATGAT-TGGCT 14506 Query 73514 TCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCT 73573 || ||| | || || ||||||||||| |||| ||| || || |||| || | Sbjct 14507 AGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGCCAATAGT 14566 Query 73574 ATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTT 73624 | | || | | ||| | || ||||| || || |||||||||||| || Sbjct 14567 TTAGCACA---TTTGTTGCTACTATGGGG-CCCGAAGCACAAGGAGATTTT 14613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561547122709560