Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq46261 98.7 8e-16 seq44943 95.1 1e-14 seq285744 89.7 4e-13 seq122391 86.0 5e-12 seq549981 82.4 6e-11 >seq46261 Length=4898 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| || |||||||| || || || ||||| ||||| ||| | || ||| ||| | Sbjct 459 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAATCCTCA 400 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 399 -GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 341 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || || | ||| ||||| ||||| ||||||| | | || |||| |||||||| Sbjct 340 GCAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGCACTCTGGCAGATTACAA 281 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||| || || ||||| | ||| ||||| Sbjct 280 CATTCAGAAGGAGTCTACTCTCCACCTGGTG 250 >seq44943 Length=9166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| || |||||||| || | |||||||| ||||| ||| | || ||| ||| | Sbjct 52 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTTGAGTCCTCA 111 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || ||||| ||||| |||||| | ||| ||| || Sbjct 112 -GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCA 170 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || || | ||| ||||| ||||| ||||||| | | || ||||||| ||||| Sbjct 171 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCTTGGCGGACTACAA 230 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||| || || || || | ||| ||||| Sbjct 231 CATTCAGAAGGAGTCCACCCTTCACCTGGTG 261 >seq285744 Length=7542 Score = 89.7 bits (98), Expect = 4e-13 Identities = 196/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 34317 CTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAG 34376 ||| ||||| |||||| |||| | |||| ||| ||||| |||||| ||||| Sbjct 6126 CTCTGTCTCAGGGTTGCCACACTTATAACACTGGACATACTTGTTGATGAACTTCTCAAG 6067 Query 34377 CAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTA 34436 || | | ||| | | ||| |||| || ||||| ||| | | | | |||| Sbjct 6066 AAGAGCGGCCAGCTTTGCAGTGTCATGGGCACCATTGACTATGGAAACTCCTGTCTTGTC 6007 Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||| | | | ||| || || ||||| || || ||||||||||| | ||| || || Sbjct 6006 ATCAAATTTAGATTGTGCCCCAAGCTCACAGCCAAAGTACTTTGTTGTGTAGGAAGCTGG 5947 Query 34497 ACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCC 34556 | ||||||| || || || || |||||| |||||| ||||||||||| || || Sbjct 5946 CCTGGCAAGCGCTTTCGCTATGTCAACCATGTTCACGATGTTGGTCTTGATGCCATTACC 5887 Query 34557 CTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 || ||||| | |||| | || ||||| ||||| | ||| || ||||| Sbjct 5886 ATTGCCTTCTATTTTGGTTAACATTTTGGGCATCTTGTACCTGTAAAAGGCGTC 5833 >seq122391 Length=5611 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | |||||||| || || || | || ||| | Sbjct 2712 ATGCAGATTTTTGTCAAGACCCTCACCGGCAAGACTATCACTCTTGAGGTTGAGAGTTCA 2771 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| ||||| || ||| | || ||| ||| Sbjct 2772 GATACCATTGACAATGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAA 2831 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || ||||| ||||| |||| | | || |||| ||||||||| Sbjct 2832 CAGAGGCTTATCTTTGCTGGAAAACAACTGGAAGATGGCCGCACCTTGGCTGATTACAAC 2891 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || || || || Sbjct 2892 ATTCAGAAGGAGTCCAC 2908 >seq549981 Length=8207 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || || | |||||||| ||||| ||| | || ||| || Sbjct 7933 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAATCTTCG 7874 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || || | ||| ||| || Sbjct 7873 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 7814 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | || | |||||||||||| Sbjct 7813 CAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGCACCCTTGCGGATTACAAC 7754 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 7753 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 7724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404883230157551