Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq44943 95.1 9e-15 seq41339 95.1 9e-15 seq558297 93.3 3e-14 seq46261 91.5 1e-13 seq1545881 86.0 5e-12 seq569580 86.0 5e-12 seq138816 86.0 5e-12 seq1486945 82.4 6e-11 seq584639 82.4 6e-11 seq529058 82.4 6e-11 seq244586 82.4 6e-11 seq125618 82.4 6e-11 >seq44943 Length=9166 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| | || ||| | Sbjct 52 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTTGAGTCCTCA 111 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || |||||| | ||| ||| ||| Sbjct 112 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAG 171 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||||||||||||| Sbjct 172 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCTTGGCGGACTACAAC 231 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || | ||| ||||| Sbjct 232 ATTCAGAAGGAGTCCACCCTTCACCTGGTG 261 >seq41339 Length=11645 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || ||||| ||||| ||| | || ||| | Sbjct 3323 ATGCAGATTTTTGTCAAGACACTGACTGGCAAGACCATCACCCTGGAGGTCGAGTCCTCT 3264 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| ||||| || ||| | ||| ||| ||| Sbjct 3263 GACACCATTGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAG 3204 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| ||||| ||||| ||||| | | || |||||||||||||| Sbjct 3203 CAGCGCCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAAC 3144 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 3143 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 3114 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || ||||| ||||| ||| | || ||| | Sbjct 3551 ATGCAGATTTTTGTCAAGACACTGACCGGCAAGACCATCACCCTGGAGGTCGAGTCCTCG 3492 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | | || || ||||| ||||| || ||| | || ||| ||| Sbjct 3491 GACACTATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCGGACCAG 3432 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||| | | || |||| ||||||||| Sbjct 3431 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTACAAC 3372 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 3371 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 3342 >seq558297 Length=3815 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| ||||| || | || ||||| ||||| ||| | || |||| || Sbjct 1412 AATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGTCTTC 1471 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || || || ||| | ||| ||| || Sbjct 1472 GGACACCATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 1531 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || |||| || || || ||||| ||||| | | || |||| |||||||| Sbjct 1532 GCAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCAGACTACAA 1591 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || ||||||||||| | ||| ||||| Sbjct 1592 CATCCAGAAGGAGTCTACCCTTCACCTGGTG 1622 >seq46261 Length=4898 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || || || ||||| ||||| ||| | || ||| | Sbjct 459 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAATCCTCA 400 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 399 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 340 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||| || |||||| Sbjct 339 CAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGCACTCTGGCAGATTACAAC 280 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||||||||| | ||| ||||| Sbjct 279 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 250 >seq1545881 Length=1019 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || ||||| ||||| ||| | || ||| | | Sbjct 495 ATGCAGATTTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCC 554 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || || | || ||| ||| Sbjct 555 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAG 614 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||||||||||||| Sbjct 615 CAGCGTCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGGCGGACTACAAC 674 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 675 ATCCAGAAGGAGTCCACCCTTCACCTGGTG 704 >seq569580 Length=4235 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| |||||||| | || |||| | Sbjct 2438 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACACTTGAGGTGGAGTCCTCG 2379 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 2378 GACACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2319 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | || || | || ||||||||| Sbjct 2318 CAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCTGACTACAAC 2259 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 2258 ATCCAGAAGGAGTCCAC 2242 >seq138816 Length=1792 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || | || ||||| ||||| ||| | || ||| || Sbjct 1291 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAATCTTCT 1232 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 1231 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1172 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | || || | ||| ||||| ||||| ||||| | | || |||||||||||||| Sbjct 1171 CAACGCCTCATCTTTGCCGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 1112 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 1111 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 1082 >seq1486945 Length=5508 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || | || ||||| ||||| ||| | || |||| || Sbjct 3445 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCT 3504 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 3505 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3564 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||| | | || | |||||||||||| Sbjct 3565 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCGGACTACAAC 3624 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 3625 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 3654 >seq584639 Length=1662 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || ||||| ||||| ||| | || |||| | Sbjct 278 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 219 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| ||||| || ||| | ||| ||| ||| Sbjct 218 GACACCATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAG 159 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||| | | || |||| ||||||||| Sbjct 158 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTACAAC 99 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 98 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 69 >seq529058 Length=7459 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || || || | || ||||| ||||| ||| | || ||| | Sbjct 1121 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCG 1180 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || || || ||| | || ||| ||| Sbjct 1181 GACACAATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 1240 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || |||||||||||||| Sbjct 1241 CAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCGGACTACAAC 1300 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 1301 ATCCAGAAGGAGTCTACCCTCCACCTGGTG 1330 >seq244586 Length=1852 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || | || ||||| || || ||| | || |||| | Sbjct 85 ATGCAGATTTTTGTTAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGGAGTCGTCT 144 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 145 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATACCCCCGGACCAG 204 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||| | | || |||| ||||||||| Sbjct 205 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAC 264 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 265 ATCCAGAAGGAGTCTACCCTTCACCTGGTG 294 >seq125618 Length=4554 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||| |||||| | || || | |||||| || ||||||||||| | | || |||| || Sbjct 2916 GGACCAGCAGCGCCTCATCTTTGCGGGGAAGCAGCTGGAGGATGGCCGCACTTTGGCCGA 2975 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||| ||||||||||| ||| | ||| ||||| || Sbjct 2976 CTACAACATCCAAAAGGAGTCGACGCTTCACCTGGTGCTG 3015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391187630362123