Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq122391 118 8e-22 seq565928 104 2e-17 seq8108 104 2e-17 seq138816 100 2e-16 seq105165 91.5 1e-13 seq1492279 86.0 5e-12 >seq122391 Length=5611 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | |||||| ||||||||||| || ||||||||||| || | ||| || | Sbjct 3610 CGCAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTATAATCTGCCAAGGTACGCCCA 3551 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | || | || |||||||| || ||||| || || ||| Sbjct 3550 TCCTCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATTCCTTCCTTG 3491 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || | || | ||||| || || || |||||||| || Sbjct 3490 TCCTGGATCTTAGCCTTCACGTTATCGATGGTGTCGGAGCTCTCCACCTCAAGAGTGATG 3431 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||||| || |||||||| |||||||| Sbjct 3430 GTCTTCCCAGTTAGCGTCTTAACAAAGATCTGCAT 3396 >seq565928 Length=4911 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | || || || | ||||| ||||| || || || ||||| || || ||| Sbjct 3970 CCTCCCCTAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 4029 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || || || |||||||| | || | | ||||||||||| || Sbjct 4030 AGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGAGGG 4089 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || |||||| | || | |||||||| || || Sbjct 4090 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGACGACTCCACC 4149 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || || || || ||||| |||||||| Sbjct 4150 TCAAGGGTGATGGTCTTACCTGTCAATGTCTTCACAAAGATCTGCAT 4196 >seq8108 Length=1851 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || || || || || | ||||||| ||||| | | | |||||| | Sbjct 546 CGGAGCACCAGGTGGAGAGTAGACTCCT---GAATGTTGTAATCAGTCA-GATGCGAGCA 601 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||| ||||| || | |||| | ||||| ||||| || |||||||| || Sbjct 602 TCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTA 661 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | | || ||| | || ||||||||| || || || || || || Sbjct 662 TCCTGGATCCTGGCCTTAACATTGTCGTTGGTGTCAGAAGACTCAACCTCTAGGGTAATG 721 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||| ||||| || |||||||||||||| Sbjct 722 ATTTTGCCAGTCAAGGTCTTCACAAATATCTGCAT 756 >seq138816 Length=1792 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || |||||||| || || ||||| || ||||||| |||||| ||| || || || Sbjct 1317 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGGCCATCCTCAAGCTGC 1376 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| || | || | | ||||| ||||| ||||| ||||| ||||| || | || Sbjct 1377 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 1436 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | ||||| || || || || || || || || ||||| || Sbjct 1437 GCCTTCACATTGTCAATGGTGTCCGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTC 1496 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| || |||||||||||||| Sbjct 1497 AGGGTCTTGACAAATATCTGCAT 1519 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||| || || ||||| || || || ||||| || || || | ||||| ||| Sbjct 1536 AGGACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCATCC 1595 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||| || || || || | |||| | ||||| ||||| ||||| ||||| ||||| Sbjct 1596 TCGAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 1655 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || || ||| | || | |||||||| || || || || || || || Sbjct 1656 TGGATCTTGGCCTTCACATTATCGATGGTGTCAGATGACTCCACCTCCAGGGTGATGGTC 1715 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || | ||| || |||||||||||||| Sbjct 1716 TTGCCGGTGAGGGTCTTCACAAATATCTGCAT 1747 >seq105165 Length=13307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| ||||| || ||||| |||||||| ||||| || Sbjct 12841 TCCACCCCTGAGCCTCAGGACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGC 12900 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || | || || |||||| | || | ||||||||||| || || Sbjct 12901 TAATGTTCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCTGGGGG 12960 Query 29679 AATACCCTCTTTGTCTTG 29696 ||| ||||| ||||| || Sbjct 12961 AATGCCCTCCTTGTCCTG 12978 >seq1492279 Length=5800 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| | ||| ||||||||||| || || ||||| |||||||| ||||| || Sbjct 3474 CCACCCCTCAGCCTCAGGACCAAATGAAGAGTCGACTCTTTCTGAATGTTGTAATCAGCT 3533 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || |||||| | || | |||||||| || || || Sbjct 3534 AATGTCCGTCCATCTTCCAGCTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGTGGG 3593 Query 29680 ATACCCTCTTTGTCTTG 29696 || || || ||||| || Sbjct 3594 ATGCCTTCCTTGTCCTG 3610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377793308655687