Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq68655 154 2e-32 seq507140 138 1e-27 seq539347 132 5e-26 seq216476 116 4e-21 seq550293 102 9e-17 seq532379 96.9 4e-15 seq428484 96.9 4e-15 seq214663 89.7 5e-13 seq542539 86.0 7e-12 >seq68655 Length=5599 Score = 154 bits (170), Expect = 2e-32 Identities = 181/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 157384 GGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTAC 157443 || ||||||||||||||| || || | |||||||| || ||||| |||||| || Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 157444 TCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 157503 || || | || || ||| | | ||| | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 157504 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAG 157563 || | |||| ||||||| | || |||||||||||||| ||| |||| | || |||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 157564 GCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 157623 ||||||||||| || ||||||||||| ||||||||| | || | ||||| |||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 157624 GGATC 157628 || || Sbjct 962 GGTTC 966 >seq507140 Length=321 Score = 138 bits (152), Expect = 1e-27 Identities = 193/271 (71%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 159180 ATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTC 159239 |||| ||||||||| || |||||||| || ||||| | || || ||||||| || Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 159240 GCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCAC 159299 || ||| ||||| || || | ||||| | ||| | || ||| | ||||| || || Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 159300 AATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTT 159359 |||||||| | ||||| || ||||||||||||||||| | | |||||| || || Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 159360 CTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCA 159419 |||| ||||||||||| | || || ||||| || ||| ||||| || || ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 159420 AACACCTTTAAGGCGTTTGATTCAACTCAAG 159450 || ||||| || ||| | ||||||||| Sbjct 289 AATACCTTCTGTGCTTTTAACCCAACTCAAG 319 >seq539347 Length=3493 Score = 132 bits (146), Expect = 5e-26 Identities = 116/143 (81%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 157507 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCA 157566 || |||| ||||||| | || |||||||||||||| |||| |||| | || ||||||||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 157567 GAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGA 157626 |||||||| || ||||||||||| ||||||||| | || || ||| | |||||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 157627 TCTTTGTTCTCTGCTATGCACGG 157649 | | ||| |||||||||| || Sbjct 120 TTCCTATTCACTGCTATGCATGG 142 >seq216476 Length=3150 Score = 116 bits (128), Expect = 4e-21 Identities = 195/277 (70%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 159102 GGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGC 159160 ||||||||| | ||||| ||||||| | || ||| | || | || | || ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 159161 TATTGCGTTCTCTGGTCCTATTGCTGTTTTT-GTCAGCGTCTTCCTTATCTACCCACTTG 159219 || | ||||||||||| |||| ||||||| || ||| |||||| | || ||||| | Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 159220 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTAC 159279 | || || ||||||| || | ||| ||||| || || || || || | ||| | | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 159280 TCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTG 159339 | ||| | | ||| || || ||||||| | ||||| || ||||||||||||||||| Sbjct 2822 TTTTCTT-CTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGCCA 2764 Query 159340 GTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGG 159376 || |||| | || || | || |||||||||| Sbjct 2763 AAATATTAGGCGTGGCTCTACGATGCACTATTCATGG 2727 >seq550293 Length=8024 Score = 102 bits (112), Expect = 9e-17 Identities = 176/252 (70%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 159086 TGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTA 159144 ||| ||||| | ||| ||||||||| | | | |||||||| || || ||| || | Sbjct 7586 TGCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT- 7528 Query 159145 TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 159204 | || | || ||||| || |||||||| |||| |||||| |||| | | | | ||| Sbjct 7527 TACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATTCT 7469 Query 159205 TTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAA 159264 |||| || ||||| || || || ||||||| || || || || | | || | | Sbjct 7468 TTATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGA 7409 Query 159265 TATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATA 159324 |||| || ||| | | ||| | ||| | || || ||||||| | ||||| || |||| Sbjct 7408 TATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATA 7349 Query 159325 TGATGGGAGTTG 159336 |||||||||||| Sbjct 7348 TGATGGGAGTTG 7337 >seq532379 Length=15352 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 158802 CGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTACCCACTGCTTATCTT 158861 ||||| |||||||||||||| || |||||||| || | || | || ||||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 158862 GCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTC 158921 ||| | || ||||| |||| || || ||||| | || |||||||| ||| || | Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCAT-GATTG 14503 Query 158922 GCTACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGAT 158981 |||| ||||||| | || || || ||| | || |||| |||||| || || || || Sbjct 14504 GCTAGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGCCAAT 14563 Query 158982 GCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTT 159034 | | | |||| | |||| || ||||| || || || ||||| ||||| Sbjct 14564 AGTTTAGCACATT---TGTTGCTACTATGGGG-CCCGAAGCACAAGGAGATTT 14612 >seq428484 Length=423 Score = 96.9 bits (106), Expect = 4e-15 Identities = 99/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 159417 GCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACT 159476 ||||| ||||| || ||| | |||||||||| || || |||||||| ||||||||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 159477 GCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCAT 159536 || |||||||| ||||| || ||||| || |||| ||||| || || || ||| | ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 159537 TTCTTTAT 159544 | ||||| Sbjct 337 CT-TTTAT 343 >seq214663 Length=1678 Score = 89.7 bits (98), Expect = 5e-13 Identities = 185/273 (68%), Gaps = 7/273 (3%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||| | | ||| ||||| || |||| ||| | || | || ||||| |||| | Sbjct 1358 TTCTACAACTGGATAACTAGCAGTGACAATCGTCTATACATCGGATGGTTTCGTGTTTTG 1417 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | ||||| |||| || ||| | || ||| | || || | Sbjct 1418 ATGATCCCTACCTTATTGACGACAACT-TCTGTATTTATTATCGCCTTCATCGCCGCCCT 1476 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 || || ||||| || |||||||| || | ||| |||||||| | | || | ||||| Sbjct 1477 TCTAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAA 1536 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 || | |||||||| || | ||| |||| || ||| | | ||||| ||||| || Sbjct 1537 TATTACCTCTGGTGTTATTATCCCTACTTCTGCGGCGATCAGATTGCACTTGTACCCAAT 1596 Query 157290 CTGGGA-----AGCAGCATCACTTGATGAGTGG 157317 ||||| ||| ||||| ||||||||||| Sbjct 1597 TTGGGATGGGAAGCTGCATCTGTTGATGAGTGG 1629 >seq542539 Length=11310 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 157890 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 157949 |||||| ||| ||| ||||| || || | ||||| || | ||||| | | | || Sbjct 7102 CCTCAAGCGTT-CAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATAC 7044 Query 157950 CTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158009 ||||| ||| || | ||||| ||| |||||| |||||||||||||| | ||||| || Sbjct 7043 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGC 6984 Query 158010 ACACAACTTCCCACTGGATCTTGCTGCTG 158038 ||||||||||| || || | |||| || Sbjct 6983 TCACAACTTCCCTCTAGACTTAGCTGATG 6955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534492811624560