Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq68655 161 1e-34 seq507140 145 9e-30 seq539347 141 1e-28 seq216476 120 4e-22 seq550293 107 2e-18 seq37697 107 2e-18 seq532379 104 3e-17 seq466961 100 3e-16 seq40677 84.2 3e-11 >seq68655 Length=5599 Score = 161 bits (178), Expect = 1e-34 Identities = 189/253 (75%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 177891 GGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATAC 177950 || ||||||||||||||| | || | |||||||| || ||||| ||||||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 177951 TCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTC 178009 || || | ||||||||| | | || | ||||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTAT-TTTCTTGATTTACCCTATTGGTTAAGTAAG 840 Query 178010 ATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 178069 || | |||| ||||||| | || |||||||||||||| ||| ||| |||||||||| Sbjct 841 CTTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCA 900 Query 178070 AGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGG 178129 ||||| ||||| ||||||||||| || ||||||||| | ||| | ||||| |||||||| Sbjct 901 GGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGG 960 Query 178130 TGGATCTCTTTTC 178142 || || || ||| Sbjct 961 CGGTTCCCTATTC 973 >seq507140 Length=321 Score = 145 bits (160), Expect = 9e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 179344 ATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTT 179403 |||| || || ||| |||||| || || || ||||| | ||||| ||||||||||| Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 179404 GCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCAC 179463 ||||| ||||| || || |||| ||| ||||| | |||||||| ||||| || || Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 179464 AACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTG 179523 || ||||| | ||||| ||||| |||||||||||||| | | | |||| |||||| Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 179524 CTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGA 179576 || | ||||||||||||| || ||||| || || | | ||| || || || Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 281 >seq539347 Length=3493 Score = 141 bits (156), Expect = 1e-28 Identities = 118/143 (83%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 178014 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCA 178073 || |||| ||||||| | || |||||||||||||| |||| ||| |||||||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 178074 GAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGA 178133 || ||||| ||||||||||| || ||||||||| | ||||| ||| | |||||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 178134 TCTCTTTTCTCTGCTATGCATGG 178156 | || ||| ||||||||||||| Sbjct 120 TTCCTATTCACTGCTATGCATGG 142 >seq216476 Length=3150 Score = 120 bits (132), Expect = 4e-22 Identities = 197/279 (71%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 179266 GGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGC 179324 || |||||| | || || ||||||| | || ||| | || | || | ||| ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 179325 GATTGCTTTTACTGGTCCTATTGCCGTATTC-GTTAGTGTATTTCTCATCTACCCACTTG 179383 || | || ||||||| |||| || || ||| ||||| || | || ||||| | Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 179384 GACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTAC 179443 | ||||| |||||||||||| ||| |||||||| || ||||| ||| ||||| | | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 179444 TTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAG 179503 ||||||| | ||| || || || |||| | ||||| ||||| |||||||||||||| Sbjct 2822 TTTTCTT-CTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGCCA 2764 Query 179504 GTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAG 179542 || | || | ||||| | | |||||||||||| Sbjct 2763 AAATATTAGGCGTGGCTCTACGATGCACTATTCATGGAG 2725 >seq550293 Length=8024 Score = 107 bits (118), Expect = 2e-18 Identities = 180/255 (71%), Gaps = 9/255 (4%) Strand=Plus/Minus Query 179250 TGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTA 179308 ||| || || | ||| || |||||| | | | | |||||||| || || ||| || | Sbjct 7586 TGCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT- 7528 Query 179309 TCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTC 179368 | || |||| ||||| || | || || |||| ||||| | || ||| | |||| Sbjct 7527 TACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTA-TCTATTCT 7469 Query 179369 TCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCG---TTTGGTGTTGCGG 179425 | || || ||||| || ||||| ||||||||||||| |||| || | | || Sbjct 7468 TTATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGC---ATCGAGTTTCAGCATAGCAA 7412 Query 179426 CGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTC 179485 |||| ||||||||| | ||||||| ||| |||| || || |||| | ||||| |||| Sbjct 7411 CGATATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTC 7352 Query 179486 ACATGATGGGAGTTG 179500 | ||||||||||||| Sbjct 7351 ATATGATGGGAGTTG 7337 >seq37697 Length=321 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 179316 TTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTA 179375 ||| ||||| || | || ||||| | |||| || || ||| ||||| || || || Sbjct 2 TTATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTA 61 Query 179376 CCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAG 179435 ||||| || ||||| | |||||||||| ||| |||||| | || ||||| ||| | Sbjct 62 TCCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTG 121 Query 179436 ATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGG 179495 ||| | |||||||| | ||| || || || |||| | ||||| ||||| |||| ||| Sbjct 122 TTTCATCCTTTTCTT-CTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGG 180 Query 179496 AGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAAC 179546 |||||| || | || | ||||| | | ||||||||||||| || Sbjct 181 AGTTGCCTAAATATTAGGCGTGGCTCTACGATGCACTATTCATGGAGTGAC 231 >seq532379 Length=15352 Score = 104 bits (114), Expect = 3e-17 Identities = 130/177 (73%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 178965 TCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCT 179024 |||||| || || || ||||| || |||||||| || | || |||| ||||||| | Sbjct 14384 TCGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTT 14443 Query 179025 TGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCATGGTCT 179084 || | || ||||| |||| |||||| ||||||| || |||||| ||||||| | | Sbjct 14444 CGCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCATGAT-T 14502 Query 179085 TGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGC 179141 |||||||||||| | ||||| ||| ||| | || |||| || || || ||||| Sbjct 14503 GGCTAGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGC 14559 >seq466961 Length=778 Score = 100 bits (110), Expect = 3e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 179815 GAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGT 179874 ||||||||||| || ||||| ||||| || || || |||||| | || || || | ||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 179875 GCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTA 179934 || ||| ||||| || ||||| || |||||||| | || ||||| ||||| || ||| Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 179935 CCTAGTGGTAACGCACT 179951 || |||| ||||| || Sbjct 657 CCACGTGGAAACGCTCT 641 >seq40677 Length=4500 Score = 84.2 bits (92), Expect = 3e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 |||||||| ||||||||||||||| | || ||| |||||||| || ||||| |||| Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGATTGCTGTT 95 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCA 178003 ||||| || | | ||||||||| || | | ||| ||||| | | || ||| | || || Sbjct 94 GCATATTCAACTCATGTTGCAGCTGCTACTGTAGT-TTTCTTGATTTACCCTATTGGCCA 36 Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCT 178038 ||| | || |||| ||| ||| | || |||| Sbjct 35 AGGAAGCTCTTCTGATGGTATACCTTTAGGAATCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593692349376120