Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq539222 134 1e-25 seq553040 131 1e-24 seq1491419 125 5e-23 seq539905 100 2e-15 seq2649 86.0 5e-11 >seq539222 Length=7428 Score = 134 bits (148), Expect = 1e-25 Identities = 309/462 (67%), Gaps = 10/462 (2%) Strand=Plus/Plus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 || || || || ||| || |||| ||||| || ||||| | | || || || | Sbjct 2342 TCGATGCCCTCATACAGCGAGTCAATCTCAATGGTGGTTTGTGCAGTGGAGGAGAGGGTC 2401 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 | || || || ||||| |||||||| || || || | || | | | ||| | | | Sbjct 2402 CTCTTCGCCCGCTCACAAGCTGTCCTCAGCCTACGGAGAGCCCTGG--GGTTGCCACTGA 2459 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 ||| | || | || |||||||| |||| ||| | | || | | || |||| Sbjct 2460 TATCCTTCTTGTTCTTCCTCTTGAATTCTTGGACAAAGTGGTTGACCATCCTGTTGTCAA 2519 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || ||||| || | | ||||| || | || | | || | || | || |||| Sbjct 2520 AGTCCTCACCACCAAGGTGAGTATCACCAGCAGTGGACTTGACCTCAAAGATGCCCTCTT 2579 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | ||||| |||||| ||| |||||||| | ||||| || || |||||| Sbjct 2580 CAATGGTGAGAAGAGAGACATCAAAGGTGCCACCACCAAGGTCAAAGATGAGAACATTCT 2639 Query 282318 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || | ||| || || ||||||||||| |||| ||||||||||||||| | Sbjct 2640 TCTCACCAACACTGGTGGCCTTCTTGTCAAGACCATAAGCAATAGCAGCAGCAGTTGGCT 2699 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||| || || | || |||||| || |||||||| ||| ||||| || ||||| || | Sbjct 2700 CATTGATGATGCGCATAACATTTAGGCCAGCAATCACTCCAGCATCCTTGGTGGCCTGCC 2759 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || || || || || || ||||||||||| | || |||| Sbjct 2760 TCTGGGAGTCATTGAAGTAGGCAGGAACAGTGACGACAGCAT 2801 >seq553040 Length=6571 Score = 131 bits (144), Expect = 1e-24 Identities = 531/823 (65%), Gaps = 18/823 (2%) Strand=Plus/Minus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | || ||||| || || | ||||||||| || || |||||||||| |||| | Sbjct 5124 GTCATGACTCCTCCAGCAGTCTCAAGACCAAGAGACAGTGGGGTGACATCAAGGAGGAGA 5065 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | | || | || || | | |||| ||| ||||| || || | ||||||||| Sbjct 5064 AGGTCCTGCACCTTCTCGTTCCCCTCACCACTAAGGATAGCAGCCTGGACGGCAGCACCA 5005 Query 281783 TATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 || ||||||||||||||||| |||| | || || || | || || ||||| || | Sbjct 5004 TAGGCAACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGCTCCTTCCCGTTGAAGAAGT 4947 Query 281841 TTGAAAGAAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 ||| || || || | || |||| || | | || || ||||| | || | ||| Sbjct 4946 CCTGAAGCAGCTG-CTGAACTCTAGGGATTCTGGTGGAACCACCAACAAGCACGACATCA 4888 Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAA-ACTTTTTCAACGGGTTCAAGAC 281957 || | ||| | || |||| || | |||| | |||| | || || | || | Sbjct 4887 TGGATA-GTGCTCTTGTCCATCTTGGCATCCCTCAGGCACTTCTCCACTGGCTCCATGCA 4829 Query 281958 CAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017 | | || || | ||| || || || || | || || || | ||| || Sbjct 4828 CTTC-CTGAAGAGGTCCATGTTGAGCTCCTCAAACCTGGCCCTGGTGATGGTGGAATAGA 4770 Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 |||||| ||| || || | |||||| | || || || || || | | ||||| || | Sbjct 4769 AATCAACTCCCTCAAAGAGAGAATCGATCTCGATGGTGGTCTGGGCAGTGGAAGAAAGGG 4710 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG-CTTTTGCTGATTGATTC 282136 | || || | ||||||| ||||| || || | || | | | | | | | | Sbjct 4709 TCCTCTTCGCCCTCTCACATGAAGTCCTGAGCCTCCTCAAAGACCTGGGGTTACC-ACTG 4651 Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196 | ||| | || | || |||||||| |||| ||| | | || | ||| || ||| Sbjct 4650 ATATCCTTCTTGTGCTTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATACGGTTGTCA 4591 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 || || || || || | | ||| | || | || || | || | |||| || || Sbjct 4590 AAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTGGCCTTCACCTCAAAAATACCCTCC 4531 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316 |||| | | |||| |||||| || |||||||| | ||||| ||||| |||||| Sbjct 4530 TCAATGGTAAGGAGAGAGACATCAAAAGTGCCACCACCGAGGTCAAAGATAAGCACATTC 4471 Query 282317 ATTTCTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 | || | |||| | || ||||||||||| |||| || ||||| ||||| Sbjct 4470 TTCTCACCAACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCGGCAGCTGTTGGC 4411 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 || || || || | || ||||||||||||||||| || ||||| || || || || Sbjct 4410 TCGTTGATGATACGCATCACATTAAGACCAGCAATAACACCAGCATCCTTGGTAGCCTGC 4351 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || ||||| || || || ||||| || || | |||||||| Sbjct 4350 CTCTGGGAATCATTGAAGTAAGCAGGCACGGTGACAACGGCAT 4308 >seq1491419 Length=5127 Score = 125 bits (138), Expect = 5e-23 Identities = 536/829 (65%), Gaps = 30/829 (4%) Strand=Plus/Minus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||| || ||||| || | |||||||||||||||||||||||| | ||| | Sbjct 3200 GTCATCACACCCCCGGCTGTCTCCAGACCAAGAGAAAGAGGAGTGACATCCAATAGCAGC 3141 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 281781 | | || | || || | | || ||||| | || || || | |||||| || Sbjct 3140 AGGTCCTGGACCTTCTCGTTGCCCTCTCCGCTCAAGA-TGGCAGCCTGGACAGCAGCCCC 3082 Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 || |||||||| |||||||| || | | || || || | || || ||||| || Sbjct 3081 GTAGGCAACAGCCTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTGCCGTTGAAGAAG 3024 Query 281840 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | ||||| || || || ||||| | || || || ||||| | |||| ||| Sbjct 3023 TCCTGGAGAAGCTGCTGCACTTTGGGAATCCTAGTGGAACCACCAACCAGGACAACATCA 2964 Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958 ||||| ||| | || |||| |||| |||| | | || || || || || | || Sbjct 2963 TGCACG-GTGCTCTTGTCCATCTTTGCATCCCTGAGACACTTCTCCACAGGCTCCATACA 2905 Query 281959 AGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 282016 || |||| || || || || || || | || | || | ||| | || Sbjct 2904 CTTCCTGAACAGATCCATGTTCATC--TCCTCAAACCTTGCCCGGGTGATGGTGG-AGTA 2848 Query 282017 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGA 282072 || ||||| || || |||| || |||| ||||| || || || ||| || || || Sbjct 2847 GAAGTCAATGCCCTCAAACAGCGAGTCAATCTCAATGGTGGTCTGCGCAGTGGAGGA-GA 2789 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 282132 ||| | | ||||| | ||||| | |||||| || || || | ||| | | | ||| Sbjct 2788 GAGTCCTC--TTAGCCCTCTCACAGGATGTCCTCAGCCTCCGAAGAGCTCTCG--GGTTG 2733 Query 282133 --ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 282190 | | | || |||| | || |||||||| || | ||| | | || | | Sbjct 2732 CCACTGATGTCCTTTTTGTTCTTCCTCTTGAACTCCTGGACAAAGTGGTTGACCATCCTG 2673 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || ||||| || ||||| || | | ||| | || | || ||| | || | || | Sbjct 2672 TTGTCAAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCTTTAACCTCAAAGATA 2613 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 || || |||| | | ||||| |||||| ||| ||||| || | ||||| || || Sbjct 2612 CCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGG 2553 Query 282311 ACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 |||||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 2552 ACATTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCT 2493 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 ||||| || || || || | | ||||| | |||||||| ||| ||||| || || Sbjct 2492 GTTGGCTCGTTGATGATACGAAGGACATTGATGCCAGCAATGACTCCAGCATCCTTGGTA 2433 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || || || || || || |||||||| ||||| | ||| |||| Sbjct 2432 GCCTGCCTCTGCGAGTCATTGAAGTATGCAGGTACAGTGACAACAGCAT 2384 >seq539905 Length=5437 Score = 100 bits (110), Expect = 2e-15 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 || ||||||| || || ||||||| ||||| | || | || |||| |||| || Sbjct 5167 AGAAACATCAAAAGTACCGCCACCCAAGTCAAACACCAGAA---TCGTTTCGTTGTTTT- 5112 Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 | || |||| |||||| |||| || ||||||||||| ||||| ||||| | | ||| Sbjct 5111 --TCTTCTCAAAACCATAAGCAAGAGATGCAGCAGTTGGCTCATTTATAATGCGGAGAAC 5054 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 | || || ||||| | || ||||| || || ||| ||| || || || || || || Sbjct 5053 TTCCAGCCCTGCAATACGGCCAGCATCCTTTGTTGCTGTTCTCTGCGAGTCATTGAAGTA 4994 Query 282451 TGCAGGAACAGTAATAACGGCATCTGT 282477 ||| |||||||||| || || | ||| Sbjct 4993 TGCTGGAACAGTAACCACCGCTTTTGT 4967 >seq2649 Length=10255 Score = 86.0 bits (94), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327 ||||| |||||| ||| ||||| || | ||||| || || || ||| | || | Sbjct 6507 AAGAGACACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACGTTCTTCTCACCAAC 6448 Query 282328 T-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| || || ||||||||||| |||| |||||||| ||||| || || || || Sbjct 6447 ACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTTGGCTCGTTGATGAT 6388 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | ||||| | |||||||| || ||||| || || || || || || || || Sbjct 6387 ACGGAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTAGCCTGCCTCTGCGAGTC 6328 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || |||||||| ||||| | ||| |||| Sbjct 6327 ATTGAAGTATGCAGGTACAGTGACAACAGCAT 6296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3662975270593782