Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq122391 91.5 1e-13 seq108278 89.7 3e-13 seq46261 89.7 3e-13 seq1486945 86.0 4e-12 seq549981 84.2 1e-11 >seq122391 Length=5611 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| || | || | || || ||| ||| ||||| ||||||||||||| Sbjct 3395 ACCACCTCTCAGGCGAAGAACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGC 3336 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || || | || ||||||||||| || | | |||||| || |||| Sbjct 3335 CAATGTGCGCCCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGG 3276 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| || || | | || || || | ||||||| || | Sbjct 3275 GATACCCTCCTTGTCCTGGATCTT-GGCCTTAATATTATCAATGGTGTCGGAGCTCTCAA 3217 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || || || |||| || ||||||||||||||||| Sbjct 3216 CCTCAAGTGTAATGGTCTTCCCAGTTAGTGTCTTTACAAAGATCTGCAT 3168 >seq108278 Length=2337 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || ||||||||||||| || ||||| |||| || Sbjct 769 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAGAGTGCGGCCGTCCTC 828 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| |||| ||||||||| || | || | || || || || Sbjct 829 AAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTG 888 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| | | |||| ||| | |||||| || || || |||| ||||| || | Sbjct 889 GATCTTC-GCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTGATGGTCT 947 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 948 TGCCGGTGAGTGTCTTCACAAAGATCTGCAT 978 >seq46261 Length=4898 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || ||||||||||| | || ||||| | || || Sbjct 250 CACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCCAGAGTGCGGCCATCCTC 309 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || |||||||| |||| |||||||| || | || | || || ||||| Sbjct 310 GAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 369 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| ||| || | ||| | |||||| |||||||| || | ||||| || | Sbjct 370 GATCTTCGCCTTC-ACGTTGTCGATGGTGTCTGAGGATTCCACCTCCAGGGTGATGGTCT 428 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || || |||||||||||||| Sbjct 429 TGCCAGTCAAGGTCTTGACAAAGATCTGCAT 459 >seq1486945 Length=5508 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || |||||||| || | |||||||| | || || Sbjct 2970 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGTGTGCGGCCATCCTC 2911 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| || | ||||||||| || | || | ||| || ||||| Sbjct 2910 AAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTG 2851 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | | | ||| | |||||| ||| ||||| |||| ||||| || | Sbjct 2850 GATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTCT 2792 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 2791 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2761 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || | || ||||| | || || | ||| Sbjct 3419 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCATCCTCAAGTTGC 3360 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| |||| |||||||| || | || | ||||| ||||| || || Sbjct 3359 TTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTG 3300 Query 33667 TGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| |||| |||||| || || || |||| ||||| || || || || Sbjct 3299 GCCTTCA-CATTGTCAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 3241 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 | || || ||||||||||||||| Sbjct 3240 GAGGGTCTTGACAAAGATCTGCATA 3216 >seq549981 Length=8207 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| |||| ||| || || || || ||||| || | Sbjct 7935 CCACCACGCAGGCGGAGCACCAGGTGTAAGGTGGATTCCTTCTGGATATTGTAGTCAGCA 7994 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | ||| || || ||||| |||| |||||||| || | || Sbjct 7995 AGGGTGCGCCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGG 8054 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| ||| ||| | |||||| ||| || || Sbjct 8055 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCA-CATTGTCGATCGTGTCGGATGACTCAAC 8113 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || || || || |||||||||||||| Sbjct 8114 CTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 8161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322367555221440