Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq68655 172 2e-38 seq542539 87.8 5e-13 seq40677 87.8 5e-13 >seq68655 Length=5599 Score = 172 bits (190), Expect = 2e-38 Identities = 196/258 (76%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 19838 GGACGAGAGTGGGAACTTAGCTATCGAC-TAGGAATGAGGCCTTGGATTTGTGTTGCCTA 19896 || || ||||||||||||| | || || | || ||| | ||||||||| |||||| || Sbjct 722 GGTCGTGAGTGGGAACTTA-ATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATA 780 Query 19897 CTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTA 19955 || |||| |||||||| | |||| | ||||| | | ||||| ||||| | | | Sbjct 781 TTCAGCTCATGTTGCAGCTACTACTGCTAT-TTTCTTGATTTACCCTATTGGTTAAGTAA 839 Query 19956 GCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCC 20015 |||| | |||| ||||||||| || ||||| ||||| |||||| ||| | ||||||| Sbjct 840 GCTTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCC 899 Query 20016 AAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCG 20075 | || || || ||||| || ||||| || ||||||||| | ||| | ||||||||||||| Sbjct 900 AGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCG 959 Query 20076 GTGGGTCACTATTCAGTG 20093 | || || |||||||||| Sbjct 960 GCGGTTCCCTATTCAGTG 977 >seq542539 Length=11310 Score = 87.8 bits (96), Expect = 5e-13 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446 ||||| | ||||||||||||||||| || |||| |||||||| || || | || || Sbjct 7060 GGTCGCATTATTGATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTT 7001 Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 |||||| |||| |||||||| |||||||| || ||| Sbjct 7000 ATGCATAAACGTAATGCTCACAACTTCCCTCTAGAC 6965 >seq40677 Length=4500 Score = 87.8 bits (96), Expect = 5e-13 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 19832 TACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTT 19891 || ||||| || |||||||||||||| | | || || ||| | ||||||||| |||| Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGATTGCTGTT 95 Query 19892 GCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCA 19950 || || || ||| |||||||| || ||| || ||||| | | ||||| |||| || Sbjct 94 GCATATTCAACTCATGTTGCAGCTGCTACTGTAGT-TTTCTTGATTTACCCTATTGGCCA 36 Query 19951 GGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 || |||| || |||| ||| ||||| || |||| Sbjct 35 AGGAAGCTCTTCTGATGGTATACCTTTAGGAATCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146033382787206