Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq68655 120 9e-23 seq542539 86.0 2e-12 seq533011 84.2 6e-12 >seq68655 Length=5599 Score = 120 bits (132), Expect = 9e-23 Identities = 185/260 (71%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 28966 GGACGCGAGTGGGAACTTAGCTATCGAC-TAGGAATGAGGCCGTGGATTTGTGTCGCATA 29024 || || ||||||||||||| | || || | || ||| | || |||||| ||| ||||| Sbjct 722 GGTCGTGAGTGGGAACTTA-ATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATA 780 Query 29025 CTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAG---G 29081 ||||||| || ||||| | |||| ||||| | | ||||| | ||| ||| | Sbjct 781 TTCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAG 840 Query 29082 TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTT 29141 | |||| || | |||||||| || || || || || |||||| ||| | || || Sbjct 841 CTTTTTT---GATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATT 897 Query 29142 CCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTT 29201 ||| || || || ||||| || ||||| || ||||||||| | || | ||||| || || Sbjct 898 CCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATT 957 Query 29202 CGGTGGCTCGCTATTTAGTG 29221 ||| || || ||||| |||| Sbjct 958 CGGCGGTTCCCTATTCAGTG 977 >seq542539 Length=11310 Score = 86.0 bits (94), Expect = 2e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 ||||| | ||| |||||||||||||| | |||| || |||||||| || | ||||| Sbjct 7060 GGTCGCATTATTGATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTT 7001 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 |||||| | ||||||||||| |||||||| || || Sbjct 7000 ATGCATAAACGTAATGCTCACAACTTCCCTCTAGA 6966 >seq533011 Length=4556 Score = 84.2 bits (92), Expect = 6e-12 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 29292 TTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGG 29351 |||||| ||||| ||||| |||||||||||||| || || || | || |||| ||||| Sbjct 2168 TTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTTCCCATAGTTATTTTGG 2109 Query 29352 ACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTT 29405 || || || |||||||||||| ||| |||| |||| |||||||||| Sbjct 2108 CCGATTTATATTCCAATATGCTAGTTTGAATAGCTCTGATTCTTTACACTTCTT 2055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143910813676622