Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq68655 168 2e-37 seq539347 125 2e-24 seq398894 100 8e-17 seq542539 95.1 3e-15 seq1397474 80.6 7e-11 seq121670 80.6 7e-11 >seq68655 Length=5599 Score = 168 bits (186), Expect = 2e-37 Identities = 193/257 (75%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 19057 GGACGCGAGTGGGAACTTAGCTATCGAC-TAGGGATGCGCCCTTGGATTTGTGTTGCCTA 19115 || || ||||||||||||| | || || | || ||||| ||||||||| |||||| || Sbjct 722 GGTCGTGAGTGGGAACTTA-ATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATA 780 Query 19116 CTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTC 19175 ||||||| |||||| || | |||| | ||| | | || || ||||| ||| Sbjct 781 TTCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAG 840 Query 19176 CTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCA 19235 |||| || | ||||||||| || || |||||| |||||| ||| |||||||||| Sbjct 841 CTTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCA 900 Query 19236 GGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGG 19295 ||| || || |||||||| ||||| || ||||||||| | ||| | |||||||| ||||| Sbjct 901 GGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGG 960 Query 19296 CGGGTCACTATTTAGTG 19312 ||| || ||||| |||| Sbjct 961 CGGTTCCCTATTCAGTG 977 >seq539347 Length=3493 Score = 125 bits (138), Expect = 2e-24 Identities = 117/146 (80%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||||| || || |||||| ||||||| ||| ||||||||||||| || || || Sbjct 9 TATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAA 68 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 |||||| ||||| || ||||||||| | ||||| ||| |||| |||||||| | ||||| Sbjct 69 CATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGTTTCCTATT 127 Query 19308 TAGTGCGATGCACGGTTCGCTTGTTA 19333 | ||| ||||| ||||| |||| || Sbjct 128 CACTGCTATGCATGGTTC-CTTGGTA 152 >seq398894 Length=318 Score = 100 bits (110), Expect = 8e-17 Identities = 131/175 (75%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || || | |||||| ||||| ||||| || ||||||| | Sbjct 147 ACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTGATGATCC 206 Query 18791 CGTGTCTCCTTGCAGCTACTATTT--GT-TTCATTATTGCCTTCATTGCTGCACCTCCTG 18847 | | || ||| || ||| | || || || ||||| |||||||| ||||| ||||| | Sbjct 207 C-TACCTTATTG-AG-TACAACTTCCGTATTTATTATCGCCTTCATCGCTGCCCCTCCAG 263 Query 18848 TAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 |||| |||||||| || || ||||||||| | || | | |||||||||||||| Sbjct 264 TAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 318 >seq542539 Length=11310 Score = 95.1 bits (104), Expect = 3e-15 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 ||||| | ||||||||||||||||| || |||| ||||||||||| || | || || Sbjct 7060 GGTCGCATTATTGATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTT 7001 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 ||||| ||||||||||||| |||||||| || || || ||| Sbjct 7000 ATGCATAAACGTAATGCTCACAACTTCCCTCTAGACTTAGCT 6959 >seq1397474 Length=866 Score = 80.6 bits (88), Expect = 7e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || ||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| |||||| Sbjct 844 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 785 Query 19441 GG 19442 || Sbjct 784 GG 783 >seq121670 Length=2540 Score = 80.6 bits (88), Expect = 7e-11 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||| ||| ||| ||||||||||||| | | || | ||||||||| | | || ||| Sbjct 381 GGTCATGTAATTAATACTTGGGCTGATAACATTAACCATGCTAACCTTCGTATGGAAGTA 322 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 ||||||| || ||||||||| |||||||| || || || ||| Sbjct 321 ATGCACGTACATAATGCTCACAACTTCCCTCTAGACTTAGCT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138497634465606