Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq216476 167 3e-36 seq507140 159 4e-34 seq68655 158 1e-33 seq550293 150 2e-31 seq539347 141 1e-28 seq37697 125 8e-24 seq466961 120 3e-22 seq428484 109 6e-19 seq182135 105 8e-18 seq1492040 87.8 2e-12 seq532379 84.2 2e-11 seq542539 82.4 9e-11 >seq216476 Length=3150 Score = 167 bits (184), Expect = 3e-36 Identities = 184/240 (77%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 159704 TAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAAT 159762 ||||||| ||| |||| ||||||||| || ||| |||| || || | || | ||| ||| Sbjct 3003 TAGGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAAT 2945 Query 159763 GCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT-GTCAGCGTATTCCTTATCTATCCACT 159821 || || | ||||||||||| |||| ||||||| || |||||||||| | |||||||| Sbjct 2944 GCAATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACT 2885 Query 159822 GGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCT 159881 ||| || ||| |||||||||| || ||||| || |||||||| || ||| ||||| | Sbjct 2884 GGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCAT 2825 Query 159882 GTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGC 159941 | || |||| || || || || |||| | ||||| || ||||||||||||||||| Sbjct 2824 CCT-TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq507140 Length=321 Score = 159 bits (176), Expect = 4e-34 Identities = 198/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 159784 ATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTT 159843 |||| ||||||||| ||||||||||| |||||||||| || ||| ||||||||| Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 159844 GCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCAC 159903 || || ||||| || |||||| | || ||| ||||| | | ||| | || || || || Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 159904 AACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTG 159963 || ||||| | ||||| || ||||||||||||||||| | || |||||| || ||| Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 159964 TTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCA 160023 | || || || ||||| || || ||||| ||||| | ||||| || || || ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 160024 AACACATTTAAGGCGTTTGAGCCTACTCAAG 160054 || || || || ||| | || ||||||| Sbjct 289 AATACCTTCTGTGCTTTTAACCCAACTCAAG 319 >seq68655 Length=5599 Score = 158 bits (174), Expect = 1e-33 Identities = 186/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 158009 GGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATAT 158068 || |||||||||||||| || || | |||||||| || ||||| ||| |||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 158069 TCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCT 158128 || |||| || || || | | ||| | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 158129 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158188 || | |||| ||||||| | || |||||||||||||| ||| ||| |||||||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 158189 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158248 ||||| ||||||||||||||||| || ||||| ||| | ||| | ||||| |||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 158249 GGATCTCTTTTC 158260 || || || ||| Sbjct 962 GGTTCCCTATTC 973 >seq550293 Length=8024 Score = 150 bits (166), Expect = 2e-31 Identities = 187/252 (74%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 159690 TGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTA 159748 ||| || || | |||||||| ||| ||| |||||||| ||||||| ||| ||| Sbjct 7586 TGCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCT-GTTCAAT 7528 Query 159749 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCC 159808 | || |||| ||||| || |||||||| |||| |||||| |||| | | | ||||| Sbjct 7527 TACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATTCT 7469 Query 159809 TTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAA 159868 |||| |||||||| || || ||| |||||||||||| | |||||| | ||||| | | Sbjct 7468 TTATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGA 7409 Query 159869 TCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATA 159928 | ||||||||| | | ||| | || |||| || || |||| | ||||| || |||| Sbjct 7408 TATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATA 7349 Query 159929 TGATGGGAGTTG 159940 |||||||||||| Sbjct 7348 TGATGGGAGTTG 7337 >seq539347 Length=3493 Score = 141 bits (156), Expect = 1e-28 Identities = 118/143 (83%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 158132 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCA 158191 || |||| ||||||| | || |||||||||||||| |||| ||| |||||||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 158192 GAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGA 158251 || ||||||||||||||||| || ||||| ||| | ||||| ||| | |||||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 158252 TCTCTTTTCTCTGCTATGCATGG 158274 | || ||| ||||||||||||| Sbjct 120 TTCCTATTCACTGCTATGCATGG 142 >seq37697 Length=321 Score = 125 bits (138), Expect = 8e-24 Identities = 140/186 (75%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 159756 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTA 159815 ||| ||||| || | ||||||||| | |||| ||||||||| |||||||||||| || Sbjct 2 TTATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTA 61 Query 159816 TCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAG 159875 ||||||||| || ||| |||||||||| || ||||| || |||| || || ||| | Sbjct 62 TCCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTG 121 Query 159876 ATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGG 159935 ||| | | || |||| || || || || |||| | ||||| || ||||||| ||| Sbjct 122 TTTCATCCT-TTTCTTCTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGG 180 Query 159936 AGTTGC 159941 |||||| Sbjct 181 AGTTGC 186 >seq466961 Length=778 Score = 120 bits (132), Expect = 3e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 160255 GAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGT 160314 |||||||||||||||||||| ||||| ||||| || || || || || || || ||||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 160315 GCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTA 160374 || ||||||||| || ||||| || |||||||| |||| |||||||| || || ||| Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 160375 CCTAGAGGTAACGCACTGTGATTAAA 160400 || | || ||||| || | || ||| Sbjct 657 CCACGTGGAAACGCTCTTTAATGAAA 632 >seq428484 Length=423 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 160036 GCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160095 || ||| | || |||||||| ||||| |||||||| ||||||||||| |||||||| ||| Sbjct 232 GCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGG 291 Query 160096 TCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTT 160145 || || ||||| |||||||| ||||| || || || ||| | ||| |||| Sbjct 292 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATCTTTT 341 >seq182135 Length=1057 Score = 105 bits (116), Expect = 8e-18 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 160251 AGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACT 160310 ||| |||||||||||||||||||| ||||| ||||| || || || || || || || | Sbjct 717 AGCGGAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTAT 776 Query 160311 TCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGT 160370 |||||| || |||||| || ||||| || |||||||| |||| |||||| |||| || Sbjct 777 TCGTGCGTGAATGGCAACTCAAGATCAGCCTCATGAAAATCTTATATTCCCTAAGGAGGT 836 >seq1492040 Length=4344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 159802 GTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTA 159861 ||||||||||| |||||||||| || ||| |||||||||||||||||||| | ||| Sbjct 1182 GTATTCCTTATTTATCCACTGGAGCAATCTGGTTGGTTCTTTGCACCTAGTTTTGACGTA 1241 Query 159862 GCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCC 159921 ||||| || ||| |||| | | ||| | || || || || || ||||| || |||| Sbjct 1242 GCAGCGATATTTTCATTCATCCTTTTCGTCCAAGGATTTCATAATTGGACGTTC-ACCCG 1300 Query 159922 TTC 159924 ||| Sbjct 1301 TTC 1303 >seq532379 Length=15352 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/176 (71%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 159406 CGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATATG 159465 || || || || || ||||| || |||||||| || | || |||| ||||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 159466 GCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTTGGTACACCCACGGTCTT 159525 || | || ||||| |||| || || |||||| | || |||||| ||||| | | | Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCATGAT-TG 14503 Query 159526 GCTAGTTCCTACCTTGAAGGTGCTAATTTTCTCACGGCAGCTGTCTCAACGCCTGC 159581 ||||||||||| | ||||| ||||||| | || |||| || || || ||||| Sbjct 14504 GCTAGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGC 14559 >seq542539 Length=11310 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 158525 TTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGAT 158584 ||||| ||||| || || | ||||| || | ||||| | | | || ||||| ||| Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 158585 GTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTC 158644 | | ||||| ||| |||||| |||||||||||||| | ||||| || ||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 158645 CCACTGGATCTTGCTGCTGCTGA 158667 || || || | |||| || ||| Sbjct 6973 CCTCTAGACTTAGCTGATGTTGA 6951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561694549100400