Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq68655 158 1e-33 seq507140 149 7e-31 seq216476 141 1e-28 seq539347 132 5e-26 seq550293 102 9e-17 seq532379 100 3e-16 seq428484 95.1 1e-14 seq466961 91.5 2e-13 seq407668 91.5 2e-13 seq542539 84.2 2e-11 >seq68655 Length=5599 Score = 158 bits (174), Expect = 1e-33 Identities = 182/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 160293 GGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATAT 160352 || ||||||||||||||| | || | |||||||| || ||||| ||| |||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 160353 TCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCT 160412 || |||| || || || | ||||| | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 160413 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 160472 || | |||| ||||||| | || |||||||||||||| ||| ||| |||||||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 160473 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 160532 ||||| ||||| |||||||||||||| ||||||||| | || | ||||| |||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 160533 GGATC 160537 || || Sbjct 962 GGTTC 966 >seq507140 Length=321 Score = 149 bits (164), Expect = 7e-31 Identities = 184/249 (74%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 162093 ATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTC 162152 |||| ||||||||| || |||||||| || ||| ||| || || ||||||| || Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 162153 GCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTC-AAGGATTCCA 162211 || ||| ||||| || ||| | || ||| ||||| | | ||||||| ||||||| || Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCA 167 Query 162212 TAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACT 162271 ||| ||||| ||||||| || ||||||||||||||||| | || |||||| || || Sbjct 168 TAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCT 227 Query 162272 TCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGC 162331 |||| |||||||| |||| || || ||||| || ||| ||||| || || || Sbjct 228 GCTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGC 287 Query 162332 AAACACCTT 162340 ||| ||||| Sbjct 288 AAATACCTT 296 >seq216476 Length=3150 Score = 141 bits (156), Expect = 1e-28 Identities = 202/279 (72%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 162015 GGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTTATTGGTATCCGTCCCTACAATGC 162073 || |||||| | || || ||||||| | || ||| || || | || | || ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 162074 TATTGCGTTCTCTGGTCCTATTGCTGTTTTT-GTCAGCGTCTTCCTTATCTACCCATTGG 162132 || | ||||||||||| |||| ||||||| || ||| |||||| | || ||| ||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 162133 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGT 162192 | || || ||||||| || | ||| ||||| || ||||| || ||| ||||| | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 162193 TGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTG 162252 | ||||||| |||||| ||||| |||| ||||||| || ||||||||||||||||| Sbjct 2822 T-TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGCCA 2764 Query 162253 GTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAG 162291 ||| |||| | || || | || ||||||| |||| Sbjct 2763 AAATATTAGGCGTGGCTCTACGATGCACTATTCATGGAG 2725 >seq539347 Length=3493 Score = 132 bits (146), Expect = 5e-26 Identities = 116/143 (81%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 160416 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCA 160475 || |||| ||||||| | || |||||||||||||| |||| ||| |||||||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 160476 GAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGA 160535 || ||||| |||||||||||||| ||||||||| | || || ||| | |||||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 160536 TCTTTGTTCTCTGCTATGCACGG 160558 | | ||| |||||||||| || Sbjct 120 TTCCTATTCACTGCTATGCATGG 142 >seq550293 Length=8024 Score = 102 bits (112), Expect = 9e-17 Identities = 178/255 (70%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 161996 TGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGG 162055 || ||| || || | ||| || |||||| | | | | |||||||| || || | || Sbjct 7589 TGTTGCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCA 7530 Query 162056 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 162115 | || | || ||||| || |||||||| |||| |||||| |||| | | | | || Sbjct 7529 ATTACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATT 7471 Query 162116 CCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 162175 | |||| || ||| | || || || ||||||| || || || || | | ||| | Sbjct 7470 CTTTATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAAC 7411 Query 162176 AATCTTTAGATTCCTGTTGTTTCTTC-AAGGATTCCATAACTGGACCCTGAACCCCTTCC 162234 || ||||||||| | | ||||||| || | || ||||| |||| ||||||| || | Sbjct 7410 GATATTTAGATTCATCAT-TTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTC 7352 Query 162235 ATATGATGGGAGTTG 162249 ||||||||||||||| Sbjct 7351 ATATGATGGGAGTTG 7337 >seq532379 Length=15352 Score = 100 bits (110), Expect = 3e-16 Identities = 107/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 161715 CGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTT 161774 ||||| |||||||||||||| || |||||||| || | || |||| ||||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 161775 GCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTC 161834 ||| | || ||||| |||| || |||||||| | ||| ||||||||||||| | | Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCATGAT-TG 14503 Query 161835 GCTAGTTCCTATCTTGAGGG 161854 |||||||||||| | || || Sbjct 14504 GCTAGTTCCTATTTGGAAGG 14523 >seq428484 Length=423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 162330 GCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACT 162389 ||||| ||||| || ||| | | || || || ||||| |||||||| ||||||||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 162390 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 162449 || |||||||| ||||| || ||||| ||| |||| ||||| || || || ||| | ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 162450 TTTTT 162454 |||| Sbjct 337 CTTTT 341 >seq466961 Length=778 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 162564 GAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGT 162623 ||||||||||| ||||| || ||||| || || || ||||| | || || || | ||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 162624 GCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTT 162683 || ||| | ||| || || || || ||||| || |||| ||||| ||||| ||||| Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 162684 CCTAGAGGCAACGCCCTTTAAT 162705 || | || ||||| ||||||| Sbjct 657 CCACGTGGAAACGCTCTTTAAT 636 >seq407668 Length=643 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/117 (78%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 160730 CTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCAT 160789 |||| ||| || ||| ||||||| ||||||||||||||| || || || |||| || || Sbjct 501 CTTCTTGGTTGCTTGGTCTGTAGTAGGAATCTGGTTCACTACT-TTAGTATTAGTACTAT 443 Query 160790 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCG 160846 | |||||||| || |||||||| |||||||| || | | || |||||||||| Sbjct 442 GCTTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTAATAGTCAAGGTCG 386 >seq542539 Length=11310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 160799 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACAC 160858 |||||| ||| ||| ||||| || || | | ||| || ||||||| | | | || Sbjct 7102 CCTCAAGCGTT-CAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATAC 7044 Query 160859 CTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 160918 ||||| || | | || |||||| |||||| |||||||||||||| | ||||| || Sbjct 7043 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGC 6984 Query 160919 ACACAACTTCCCACTCGACCTCGCTGCTGCTGA 160951 ||||||||||| || ||| | |||| || ||| Sbjct 6983 TCACAACTTCCCTCTAGACTTAGCTGATGTTGA 6951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548441857583400